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| United States Patent Application |
20050165074
|
| Kind Code
|
A1
|
|
Grotzfeld, Robert M.
;   et al.
|
July 28, 2005
|
Amide derivatives as C-KIT modulators
Abstract
The invention provides methods and compositions for treating conditions
mediated by c-kit wherein derivatives of amide compounds are employed.
The invention also provides methods of using the compounds and/or
compositions in the treatment of a variety of diseases and unwanted
conditions in subjects.
| Inventors: |
Grotzfeld, Robert M.; (Carlsbad, CA)
; Milanov, Zdravko V.; (San Diego, CA)
; Mehta, Shamal A.; (San Diego, CA)
; Lai, Andiliy G.; (San Diego, CA)
; Patel, Hitesh K.; (Encinitas, CA)
; Lockhart, David J.; (Del Mar, CA)
|
| Correspondence Address:
|
WILSON SONSINI GOODRICH & ROSATI
650 PAGE MILL ROAD
PALO ALTO
CA
943041050
|
| Assignee: |
Ambit Biosciences Corporation
|
| Serial No.:
|
990007 |
| Series Code:
|
10
|
| Filed:
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November 15, 2004 |
| Current U.S. Class: |
514/378 |
| Class at Publication: |
514/378 |
| International Class: |
A61K 031/42 |
Claims
What is claimed is:
1. A method of modulating c-kit kinase, said method comprising
administering an effective amount of a compound corresponding to Formula
(IA): 346wherein: M is substituted or unsubstituted heteroaryl, or
substituted or unsubstituted aryl; N is a substituted or unsubstituted
aryl, or substituted or unsubstituted hetroaryl; and K is 347Y is O or
S; each R.sub.k is independently H, halogen, substituted or unsubstituted
alkyl, --OH, substituted or unsubstituted alkoxy, --OC(O)R.sub.2,
--NO.sub.2, --N(R.sub.2).sub.2, --SR.sub.2, --C(O)R.sub.2,
--C(O).sub.2R.sub.2, --C(O)N(R.sub.2).sub.2, or --N(R.sub.2)C(O)R.sub.2,
each R.sub.2 is independently H, substituted or unsubstituted alkyl,
substituted or unsubstituted cycloalkyl, substituted or unsubstituted
heterocyclyl, substituted or unsubstituted aryl, or substituted or
unsubstituted heteroaryl; or wherein two R.sub.2 groups are linked
together by an optionally substituted alkylene; and each n is
independently 0, 1, 2, 3 or 4; or an active metabolite, or a
pharmaceutically acceptable prodrug, isomer, pharmaceutically acceptable
salt or solvate thereof.
2. The method of claim 1, wherein said compound corresponds to Formula
(IB): 348wherein: each Z is independently C, CR.sub.3, N, NR.sub.3, O,
or S, provided that no more than two Z's are heteroatoms and wherein no
two adjacent Z's are O or S, where R.sub.3 is H, substituted or
unsubstituted alkyl, substituted or unsubstituted cycloalkyl, substituted
or unsubstituted heteroaryl, or substituted or unsubstituted aryl; and
each R.sub.1 is independently H, halogen, substituted or unsubstituted
alkyl, substituted or unsubstituted alkoxy, substituted or unsubstituted
cycloalkyl, substituted or unsubstituted heterocyclyl, substituted or
unsubstituted aryl, substituted or unsubstituted heteroaryl, --OR.sub.c
--OH, --OC(O)R.sub.c, --NO.sub.2, --N(R.sub.c).sub.2, --SR.sub.c,
S(O).sub.jR.sub.c where j is 1 or 2, --NR.sub.cC(O)R.sub.c,
--C(O)N(R.sub.c).sub.2, --C(O).sub.2R.sub.c, or --C(O)R.sub.c; or two
adjacent R.sub.1's, are taken together to form a substituted or
unsubstituted aryl or heteroaryl, each R.sub.c is independently H,
substituted or unsubstituted alkyl, substituted or unsubstituted
cycloalkyl, substituted or unsubstituted aryl, or substituted or
unsubstituted heteroaryl.
3. The method of claim 2, wherein said compound corresponds to Formula
(I): 349wherein K is 350each R.sub.k is independently H, halogen,
substituted or unsubstituted alkyl, or substituted or unsubstituted
alkoxy.
4. The method of claim 3, wherein said compound corresponds to Formula
(II): 351
5. The method of claim 4, wherein said compound corresponds to Formula
(III): 352wherein Z.sub.1 is CR.sub.3 or N; and Z.sub.2 is O or S.
6. The method of claim 5, wherein said compound corresponds to Formula
(IV): 353wherein: each R.sub.1 is independently H, halogen, substituted
or unsubstituted alkyl, --O(substituted or unsubstituted alkyl),
--O(substituted or unsubstituted alkenyl), --NR.sub.cC(O)O(substituted or
unsubstituted alkyl), --NR.sub.cC(O) (substituted or unsubstituted
alkyl), --NR.sub.cC(O)(substituted or unsubstituted alkenyl),
--C(O)NR(substituted or unsubstituted alkyl), --C(O)NR.sub.c(substituted
or unsubstituted alkenyl), --NO.sub.2, --S(.dbd.O)R.sub.c, --SR.sub.c,
C(O).sub.2R.sub.c, or --C(O)R.sub.c; and two adjacent R.sub.1's, taken
together, form a substituted or unsubstituted aryl or a substituted or
unsubstituted heteroaryl; and each R.sub.2 is independently H or
substituted or unsubstituted alkyl.
7. The method of claim 6, wherein the compound is: 354
8. The method of claim 5, wherein said compound corresponds to Formula
(V): 355
9. The method of claim 8, wherein said compound is selected from the group
consisting of: 356
10. The method of claim 4, wherein said compound corresponds to Formula
(VI): 357wherein Z.sub.1 is O or S; and Z.sub.2 is CR.sub.3 or N.
11. The method of claim 10, wherein said compound corresponds to Formula
(VII): 358wherein: each R.sub.1 is independently H, halogen, substituted
or unsubstituted alkyl , --O(substituted or unsubstituted alkyl) ,
--O(substituted or unsubstituted alkenyl), --NR.sub.cC(O)O(substituted or
unsubstituted alkyl), --NR.sub.cC(O) (substituted or unsubstituted
alkyl), --NR.sub.cC(O)(substituted or unsubstituted alkenyl),
--C(O)NR.sub.c(substituted or unsubstituted alkyl),
--C(O)NR.sub.c(substituted or unsubstituted alkenyl), --NO.sub.2,
--S(.dbd.O)R.sub.c, --SR.sub.c, C(O).sub.2R.sub.c, or --C(O)R.sub.c; and
each R.sub.2 is independently H or substituted or unsubstituted alkyl.
12. The method of claim 10, wherein said compound corresponds to Formula
(VIII): 359
13. The method of claim 12, wherein said compound is selected from the
group consisting of: 360
14. The method of claim 5, wherein said compound corresponds to Formula
(IX): 361wherein: L is a linker selected from the group consisting of a
covalent bond, substituted or unsubstituted alkenylene, substituted or
unsubstituted alkylene, --C(O)NH--, --C(O)--, --NH--, --O--, --S--,
--O(substituted or unsubstituted alkylene)-, --N(substituted or
unsubstituted alkylene)-, --C(O)NH(substituted or unsubstituted
alkylene)-, --C(O)NH(substituted or unsubstituted alkenylene)-,
--NHC(O)(substituted or unsubstituted alkylene)-, --NHC(O)(substituted or
unsubstituted alkenylene)-, --C(O)(substituted or unsubstituted
alkenylene)-, and --NHC(O)(substituted or unsubstituted
alkylene)S(substituted or unsubstituted alkylene)C(O)NH--; and T is a
mono-, bi-, or tricyclic, substituted or unsubstituted cycloalkyl,
heterocyclyl, aryl, or heteroaryl.
15. The method of claim 14, wherein T of said compound corresponds to
Formula (X): 362wherein A is a substituted or unsubstituted five or
six-membered heterocyclyl, aryl, or heteroaryl; and B is a substituted or
unsubstituted five or six-membered heterocyclene, arylene, or
heteroarylene, wherein A and B together form a fused two ring moiety.
16. The method of claim 15, wherein said compound corresponds to Formula
(XI): 363
17. The method of claim 16, wherein L of said compound is a covalent bond,
--C(O)NH(substituted or unsubstituted alkylene), --O(substituted or
unsubstituted alkylene)-, --C(O)NH--, or --NHC(O)(alkylene)-.
18. The method of claim 17, wherein B of said compound is a substituted or
unsubstituted five-membered heteroarylene.
19. The method of claim 18, wherein said compound is selected from the
group consisting of: 364365
20. The method of claim 17, wherein B of said compound is a substituted or
unsubstituted 6-membered arylene or heteroarylene.
21. The method of claim 20, wherein said compound is selected from the
group consisting of: 366
22. The method of claim 20, wherein said compound is selected from the
group consisting of: 367368
23. The method of claim 14, wherein T of said compound is a tricyclic,
substituted or unsubstituted aryl, heterocyclyl, or heteroaryl.
24. The method of claim 23, wherein said compound is selected from the
group consisting of: 369
25. The method of claim 5, wherein said compound corresponds to Formula
(XII): 370wherein: L is a linker selected from the group consisting of a
covalent bond, substituted or unsubstituted alkenylene, substituted or
unsubstituted alkylene, --C(O)NH--, --C(O)--, --NH--, --O--, --S--,
--O(substituted or unsubstituted alkylene)-, --N(substituted or
unsubstituted alkylene)-, --C(O)NH(substituted or unsubstituted
alkylene)-, --C(O)NH(substituted or unsubstituted alkenylene)-,
--NHC(O)(substituted or unsubstituted alkylene)-, --NHC(O)(substituted or
unsubstituted alkenylene)-, --C(O)(substituted or unsubstituted
alkenylene)-, and --NHC(O)(substituted or unsubstituted
alkylene)S(substituted or unsubstituted alkylene)C(O)NH--; and each of
X.sub.1-X.sub.5 is independently C, CR, N, NR, S, or O, wherein no more
than three of X.sub.1-X.sub.5 is a heteroatom, and no two adjacent ring
atoms are O or S; where each R is independently H, halogen, substituted
or unsubstituted alkyl, --OH, substituted or unsubstituted alkoxy,
--OC(O)R.sub.d, --NO.sub.2, --N(R.sub.d).sub.2, --SR.sub.d,
--S(O).sub.jR.sub.d where j is 1 or 2, --NR.sub.d C(O)R.sub.d,
--C(O).sub.2R.sub.d, --C(O)N(R.sub.d).sub.2 or --C(O)R.sub.d, or two
adjacent R's are taken together to form a substituted or unsubstituted
aryl or hetroaryl, where each R.sub.d is independently H, substituted or
unsubstituted alkyl, substituted or unsubstituted cycloalkyl, substituted
or unsubstituted aryl or substituted or unsubstituted heteroaryl.
26. The method of claim 25, wherein said compound corresponds to Formula
(XIII): 371
27. The method of claim 26, wherein L of said compound is a covalent bond,
--C(O)NH--, or --O(substituted or unsubstituted alkylene)-.
28. The method of claim 27, wherein 372of said compound is selected from
the group consisting of: 373
29. The method of claim 28, wherein said compound is selected from the
group consisting of: 374375
30. The method of claim 5, wherein said compound corresponds to Formula
(XIV): 376L is a linker selected from the group consisting of a covalent
bond, substituted or unsubstituted alkenylene, substituted or
unsubstituted alkylene, --C(O)NH--, --C(O)--, --NH--, --O--, --S--,
--O(substituted or unsubstituted alkylene)-, --N(substituted or
unsubstituted alkylene)-, --C(O)NH(substituted or unsubstituted
alkylene)-, --C(O)NH(substituted or unsubstituted alkenylene)-,
--NHC(O)(substituted or unsubstituted alkylene)-, --NHC(O)(substituted or
unsubstituted alkenylene)-, --C(O)(substituted or unsubstituted
alkenylene)-, and --NHC(O)(substituted or unsubstituted
alkylene)S(substituted or unsubstituted alkylene)C(O)NH--; and each of
X.sub.1-X.sub.5 is independently C, CR, N, NR, S, or O, wherein no more
than three of X.sub.1-X.sub.5 is a heteroatom, and no two adjacent ring
atoms are O or S; where each R is independently H, halogen, substituted
or unsubstituted alkyl, --OH, substituted or unsubstituted alkoxy,
--OC(O)R.sub.d, --NO.sub.2, --N(R.sub.d).sub.2, --SR.sub.d,
--S(O).sub.jR.sub.d where j is 1 or 2, --NR.sub.d C(O)R.sub.d,
--C(O).sub.2R.sub.d, --C(O)N(R.sub.d).sub.2 or --C(O)R.sub.d, or two
adjacent R's are taken together to form a substituted or unsubstituted
aryl or hetroaryl, where each R.sub.d is independently H, substituted or
unsubstituted alkyl, substituted or unsubstituted cycloalkyl, substituted
or unsubstituted aryl or substituted or unsubstituted heteroaryl.
31. The method of claim 30, wherein said compound corresponds to Formula
(XV): 377
32. The method of claim 31, wherein said compound is selected from the
group consisting of: 378
33. The method of claim 31, wherein said compound corresponds to Formula
(XVI): 379
34. The method of claim 33, wherein said compound is selected from the
group consisting of: 380381
35. The method of claim 31, wherein said compound corresponds to Formula
(XVII): 382
36. The method of claim 35, wherein said compound is selected from the
group consisting of: 383
37. The method of claim 31, wherein said compound corresponds to Formula
(XVIII): 384
38. The method of claim 37, wherein said compound is selected from the
group consisting of: 385
39. The method of claim 31, wherein said compound corresponds to Formula
(XIX): 386
40. The method of claim 39, wherein said compound is selected from the
group consisting of: 387
41. The method of claim 31, wherein said compound corresponds to Formula
(XX): 388
42. The method of claim 41, wherein said compound is selected from the
group consisting of: 389
43. The method of claim 31, wherein said compound corresponds to Formula
(XXI): 390
44. The method of claim 43, wherein L of said compound is --NHC(O)--,
--NHC(O)(substituted or unsubstituted alkylene)-, --C(O)NH(substituted or
unsubstituted alkylene), --C(O)NH(substituted or unsubstituted
alkenylene), or --NHC(O)(substituted or unsubstituted alkenylene)-.
45. The method of claim 44, wherein said compound is selected from the
group consisting of: 391
46. The method of claim 43, wherein L of said compound is --O-- or
--O(substituted or unsubstituted alkylene)-.
47. The method of claim 46, wherein said compound is selected from the
group consisting of: 392393
48. The method of claim 43, wherein L of said compound is -(substituted or
unsubstituted alkylene)- or --NHC(O)(alkylene)S(alkylene)C(O)NH--.
49. The method of claim 48, wherein said compound is selected from the
group consisting of: 394
50. The method of claim 14, wherein said compound corresponds to Formula
(XXII): 395wherein: L.sub.1 is a linker selected from the group
consisting of a covalent bond, substituted or unsubstituted alkenylene,
substituted or unsubstituted alkylene, --C(O)NH--, --C(O)--, --NH--,
--O--, --S--, --O(substituted or unsubstituted alkylene)-,
--N(substituted or unsubstituted alkylene)-, --C(O)NH(substituted or
unsubstituted alkylene)-, --C(O)NH(substituted or unsubstituted
alkenylene)-, --NHC(O)(substituted or unsubstituted alkylene)-,
--NHC(O)(substituted or unsubstituted alkenylene)-, --C(O)(substituted or
unsubstituted alkenylene)-, and --NHC(O)(substituted or unsubstituted
alkylene)S(substituted or unsubstituted alkylene)C(O)NH--; U is a
substituted or unsubstituted cycloalkyl, hetrocycloalkyl, aryl, or
heteroaryl; and V is a substituted or unsubstituted cycloalkylene,
heterocyclene, arylene, or heteroarylene;
51. The method of claim 50, wherein said compound corresponds to Formula
(XXIII): 396
52. The method of claim 51, wherein L.sub.1 of said compound is a bond,
--O(substituted or unsubstituted alkylene)-, -(substituted or
unsubstituted alkylene)-, or --S--; and L of said compound is a covalent
bond, --C(O)NH--, --C(O)NH(substituted or unsubstituted alkylene), or
--NHC(O)(substituted or unsubstituted alkylene)-.
53. The method of claim 52, wherein V of said compound is substituted or
unsubstituted 5-membered heteroarylene.
54. The method of claim 53, wherein said compound is selected from the
group consisting of: 397398
55. The method of claim 51, wherein said compound corresponds to Formula
(XXIV): 399wherein: each of X.sub.1-X.sub.4 is independently C, CR, or
N, wherein no more than two of X.sub.1-X.sub.5 is N; where each R is
independently H, halogen, substituted or unsubstituted alkyl, --OH,
substituted or unsubstituted alkoxy, --OC(O)R.sub.d, --NO.sub.2,
--N(R.sub.d).sub.2, --SR.sub.d, --S(O).sub.jR.sub.d where j is 1 or 2,
--NR.sub.d C(O)R.sub.d, --C(O).sub.2R.sub.d, --C(O)N(R.sub.d).sub.2 or
--C(O)R.sub.d, or two adjacent R's are taken together to form a
substituted or unsubstituted aryl or hetroaryl, where each R.sub.d is
independently H, substituted or unsubstituted alkyl, substituted or
unsubstituted cycloalkyl, substituted or unsubstituted aryl or
substituted or unsubstituted heteroaryl.
56. The method of claim 55, wherein U of said compound is substituted or
unsubstituted pyrimidinyl or pyridinyl.
57. The method of claim 56, wherein said compound is selected from the
group consisting of: 400
58. The method of claim 55, wherein U of said compound is substituted or
unsubstituted phenyl.
59. The method of claim 58, wherein said compound is selected from the
group consisting of: 401402
60. The method of claim 51, wherein said compound is selected from the
group consisting of: 403
61. The method of claim 14, wherein said compound corresponds to Formula
(XXV): 404wherein T is substituted or unsubstituted cycloalkyl or
heterocylyl.
62. The method of claim 61, wherein said compound is selected from the
group consisting of: 405
63. The method of claim 1, wherein said compound is 406
64. The method of claim 1, wherein said compound is selected from the
group consisting of: 407408
65. A method of treating a c-kit mediated disease, said method comprising
administering a therapeutically effective amount of a compound
corresponding to Formula (IA): 409wherein: M is substituted or
unsubstituted heteroaryl, or substituted or unsubstituted aryl; N is a
substituted or unsubstituted aryl, or substituted or unsubstituted
hetroaryl; and K is 410Y is O or S; each R.sub.k is independently H,
halogen, substituted or unsubstituted alkyl, --OH, substituted or
unsubstituted alkoxy, --OC(O)R.sub.2, --NO.sub.2, --N(R.sub.2).sub.2,
--SR.sub.2, --C(O)R.sub.2, --C(O).sub.2R.sub.2, --C(O)N(R.sub.2).sub.2,
or --N(R.sub.2)C(O)R.sub.2, each R.sub.2 is independently H, substituted
or unsubstituted alkyl, substituted or unsubstituted cycloalkyl,
substituted or unsubstituted heterocyclyl, substituted or unsubstituted
aryl, or substituted or unsubstituted heteroaryl; or wherein two R.sub.2
groups are linked together by an optionally substituted alkylene; and
each n is independently 0, 1, 2, 3 or 4; or an active metabolite, or a
pharmaceutically acceptable prodrug, isomer, pharmaceutically acceptable
salt or solvate thereof.
Description
[0001] This application claims priority to U.S. Provisional Application
No. 60/520,273, filed Nov. 13, 2003, U.S. Provisional Application No.
60/527,094, filed Dec. 3, 2003, U.S. Provisional Application No.
60/531,243, filed Dec. 18, 2003, and U.S. Provisional Application No.
60/531,082, filed Dec. 18, 2003, the contents of which are incorporated
herein by reference in their entirety.
BACKGROUND
[0002] Protein kinases (PKs) play a role in signal transduction pathways
regulating a number of cellular functions, such as cell growth,
differentiation, and cell death. PKs are enzymes that catalyze the
phosphorylation of hydroxy groups on tyrosine, serine and threonine
residues of proteins, and can be conveniently broken down into two
classes, the protein tyrosine kinases (PTKs) and the serine-threonine
kinases (STKs). Growth factor receptors with PTK activity are known as
receptor tyrosine kinases. Protein receptor tyrosine kinases are a family
of tightly regulated enzymes, and the aberrant activation of various
members of the family is one of the hallmarks of cancer. The
protein-tyrosine kinase family, which includes Bcr-Abl tyrosine kinase,
can be divided into subgroups that have similar structural organization
and sequence similarity within the kinase domain. The members of the type
III group of receptor tyrosine kinases include the platelet-derived
growth factor (PDGF) receptors (PDGF receptors .alpha. and .beta.),
colony-stimulating factor (CSF-1) receptor (CSF-1R, c-Fms), FLT-3, and
stem cell or steel factor receptor (c-kit). A more complete listing of
the known Protein receptor tyrosine kinases subfamilies is described in
Plowman et al., DN&P, 7(6):334-339 (1994), which is incorporated by
reference, including any drawings, as if fully set forth herein.
Furthermore, for a more detailed discussion of "non-receptor tyrosine
kinases", see Bolen, Oncogene, 8:2025-2031 (1993), which is incorporated
by reference, including any drawings, as if fully set forth herein.
[0003] Hematologic cancers, also known as hematologic or hematopoietic
malignancies, are cancers of the blood or bone marrow; including leukemia
and lymphoma. Acute myelogenous leukemia (AML) is a clonal hematopoietic
stem cell leukemia that represents .about.90% of all acute leukemias in
adults. See e.g., Lowenberg et al., N. Eng. J. Med. 341:1051-62 (1999).
While chemotherapy can result in complete remissions, the long term
disease-free survival rate for AML is about 14% with about 7,400 deaths
from AML each year in the United States. The single most commonly mutated
gene in AML is FLT3 kinase. See e.g., Abu-Duhier et al., Br. J. Haemotol.
111:190-05 (2000); Kiyoi et al., Blood 93:3074-80 (1999); Kottaridis et
al., Blood 98:1752-59 (2001); Stirewalt et al., Blood 97:3589-95 (2001).
Such mutations also indicate a poor prognosis for the patient.
[0004] The compounds provided by the present invention are urea
derivatives of substituted aryls and hetroaryls, e.g., isoxazoles,
pyrazoles and isothiazoles. Urea derivatives of pyrazoles have been
reported to be selective p38 kinase inhibitors by Dumas, J., et al.,
Bioorg. Medic. Chem. Lett. 10:2051-2054 (2000). Oxazoles and isopyrazoles
are suggested as blockers of cytokine production in WO 00/43384 published
27 Jul. 2000. Urea derivatives of isoxazole and pyrazoles are described
as inhibitors of RAF kinase in WO 99/32106 published 1 Jul. 1999. Such
compounds are also described as p38 kinase inhibitors by Dumas, J., et
al., Bioorg. Medic. Chem. Lett. 10:2047-2050 (2000). These compounds are
also suggested as p38 kinase inhibitors in PCT publication WO 99/32111
published 1 Jul. 1999.
[0005] There remains a need for additional compounds that are effective in
inhibiting kinase activity. Given the complexities of signal transduction
with the redundancy and crosstalk between various pathways, the
identification of specific kinase inhibitors permits accurate targeting
with limited inhibition of other pathways, thus reducing the toxicity of
such inhibitory compounds.
SUMMARY OF THE INVENTION
[0006] The present invention provides compounds which modulate kinase
activity, and in some, embodiments inhibit protein tyrosine kinases or a
specific kinase or kinase class. In some embodiments, the compositions
and methods for treating and preventing conditions and diseases, such as
cancer, hematologic malignancies, cardiovascular disease, inflammation or
multiple sclerosis. The compounds of the invention can be delivered alone
or in combination with additional agents, and are used for the treatment
and/or prevention of conditions and diseases. Unless otherwise stated,
each of the substituents is as previously defined.
[0007] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 1
[0008] wherein:
[0009] (a) A.sub.a1 is N--R.sub.3a or C--R(.sub.3a).sub.2 and A.sub.a2 is
N--R.sub.3a or C--R(.sub.3a).sub.2, wherein one of A.sub.a1 or A.sub.a2
is N and one is C wherein each R.sub.3a is independently a suitable
substituent selected from hydrogen, or an alkyl, alkenyl, heteroalkyl,
haloalkyl, alkynyl, aryl, cycloalkyl, heterocycloalkyl, heteroaryl group
unsubstituted or substituted with one or more suitable substituents
independently selected from the group consisting of: halogens; --CN; and
--NO.sub.2; and alkyl, alkenyl, heteroalkyl, haloalkyl, alkynyl, aryl,
cycloalkyl, heterocycloalkyl, heteroaryl, --(CH.sub.2).sub.zCN where z is
a whole integer, preferably from 0 to 4, .dbd.NH, --NHOH, --OH, --C(O)H,
--OC(O)H, --C(O)OH, --OC(O)OH, --OC(O)OC(O)H, --OOH, --C(NH)NH.sub.2,
--NHC(NH)NH.sub.2, --C(S)NH.sub.2, --NHC(S)NH.sub.2, --NHC(O)NH.sub.2,
--S(O.sub.2)H, --S(O)H, --NH.sub.2, --C(O)NH.sub.2, --OC(O)NH.sub.2,
--NHC(O)H, --NHC(O)OH, --C(O)NHC(O)H, --OS(O.sub.2)H, --OS(O)H, --OSH,
--SC(O)H, --S(O)C(O)OH, --SO.sub.2C(O)OH, --NHSH, --NHS(O)H,
--NHSO.sub.2H, --C(O)SH, --C(O)S(O)H, --C(O)S(O.sub.2)H, --C(S)H,
--C(S)OH, --C(SO)OH, --C(SO.sub.2)OH, --NHC(S)H, --OC(S)H, --OC(S)OH,
--OC(SO.sub.2)H, --S(O.sub.2)NH.sub.2, --S(O)NH.sub.2, --SNH.sub.2,
--NHCS(O.sub.2)H, --NHC(SO)H, --NHC(S)H, and --SH groups unsubstituted or
substituted with one or more suitable substituents independently selected
from the group consisting of halogens, .dbd.O, --NO.sub.2, --CN,
--(CH.sub.2).sub.z--CN where z is a whole integer, preferably from 0 to
4, --OR.sub.c, --NR.sub.cOR.sub.c, --NR.sub.cR.sub.c, --C(O)NR.sub.c,
--C(O)OR.sub.c, --C(O)R.sub.c, --NR.sub.cC(O)NR.sub.cR.sub.c,
--NR.sub.cC(O)R.sub.c, --OC(O)OR.sub.c, --OC(O)NR.sub.cR.sub.c,
--SR.sub.c, unsubstituted alkyl, unsubstituted alkenyl, unsubstituted
alkynyl, unsubstituted aryl, unsubstituted cycloalkyl, unsubstituted
heterocycloalkyl, and unsubstituted heteroaryl, or two or more
substituents cyclize to form a fused or spiro polycyclic cycloalkyl,
heterocycloalkyl, aryl, or heteroaryl group, where each R.sub.c is
indepenently selected from hydrogen, unsubstituted alkyl, unsubstituted
alkenyl, unsubstituted alkynyl, unsubstituted aryl, unsubstituted
cycloalkyl, unsubstituted heterocycloalkyl, and unsubstituted heteroaryl,
or two or more R.sub.c groups together cyclize to form part of a
heteroaryl or heterocycloalkyl group unsubstituted or substituted with an
unsubstituted alkyl group; or two R.sub.3a's cyclize to form part of a
heteroaryl or heterocycloalkyl group unsubstituted or substituted with
one two or three suitable substituents selected from halogen, .dbd.O;
.dbd.S; --CN; --NO.sub.2, or an alkyl, alkenyl, heteroalkyl, haloalkyl,
alkynyl, aryl, cycloalkyl, heterocycloalkyl, heteroaryl group
unsubstituted or substituted with one or more suitable substituents
independently selected from the group consisting of: halogens; .dbd.O;
.dbd.S; --CN; and --NO.sub.2; and alkyl, alkenyl, heteroalkyl, haloalkyl,
alkynyl, aryl, cycloalkyl, heterocycloalkyl, heteroaryl,
--(CH.sub.2).sub.zCN where z is a whole integer, preferably from 0 to 4,
.dbd.NH, --NHOH, --OH, --C(O)H, --OC(O)H, --C(O)OH, --OC(O)OH,
--OC(O)OC(O)H, --OOH, --C(NH)NH.sub.2, --NHC(NH)NH.sub.2, --C(S)NH.sub.2,
--NHC(S)NH.sub.2, --NHC(O)NH.sub.2, --S(O.sub.2)H, --S(O)H, --NH.sub.2,
--C(O)NH.sub.2, --OC(O)NH.sub.2, --NHC(O)H, --NHC(O)OH, --C(O)NHC(O)H,
--OS(O.sub.2)H, --OS(O)H, --OSH, --SC(O)H, --S(O)C(O)OH,
--SO.sub.2C(O)OH, --NHSH, --NHS(O)H, --NHSO.sub.2H, --C(O)SH,
--C(O)S(O)H, --C(O)S(O.sub.2)H, --C(S)H, --C(S)OH, --C(SO)OH,
--C(SO.sub.2)OH, --NHC(S)H, --OC(S)H, --OC(S)OH, --OC(SO.sub.2)H,
--S(O.sub.2)NH.sub.2, --S(O)NH.sub.2, --SNH.sub.2, --NHCS(O.sub.2)H,
--NHC(SO)H, --NHC(S)H, and --SH groups unsubstituted or substituted with
one or more suitable substituents independently selected from the group
consisting of halogens, .dbd.O, --NO.sub.2, --CN, --(CH.sub.2).sub.z--CN
where z is a whole integer, preferably from 0 to 4, --OR.sub.c,
--NR.sub.cOR.sub.c, --NR.sub.cR.sub.c, --C(O)NR.sub.c, --C(O)OR.sub.c,
--C(O)R.sub.c, --NR.sub.cC(O)NR.sub.cR.sub.c, --NR.sub.cC(O)R.sub.c,
--OC(O)OR.sub.c, --OC(O)NR.sub.cR.sub.c, --SR.sub.c, unsubstituted alkyl,
unsubstituted alkenyl, unsubstituted alkynyl, unsubstituted aryl,
unsubstituted cycloalkyl, unsubstituted heterocycloalkyl, and
unsubstituted heteroaryl, or two or more substituents cyclize to form a
fused or spiro polycyclic cycloalkyl, heterocycloalkyl, aryl, or
heteroaryl group, where each R.sub.c is independently selected from
hydrogen, unsubstituted alkyl, unsubstituted alkenyl, unsubstituted
alkynyl, unsubstituted aryl, unsubstituted cycloalkyl, unsubstituted
heterocycloalkyl, and unsubstituted heteroaryl, or two or more R.sub.c
groups together cyclize to form part of a heteroaryl or heterocycloalkyl
group unsubstituted or substituted with an unsubstituted alkyl group;
[0010] (b) Ar.sub.1, Ar.sub.2 and Ar.sub.3 are each independently an aryl,
heteroaryl, cycloalkyl or heterocycloalkyl group unsubstituted or
substituted with one or more suitable substituents independently selected
from the group consisting of: halogens; .dbd.O; .dbd.S; --CN; and
--NO.sub.2; and alkyl, alkenyl, heteroalkyl, haloalkyl, alkynyl, aryl,
cycloalkyl, heterocycloalkyl, heteroaryl, --(CH.sub.2).sub.zCN where z is
a whole integer, preferably from 0 to 4, .dbd.NH, --NHOH, --OH, --C(O)H,
--OC(O)H, --C(O)OH, --OC(O)OH, --OC(O)OC(O)H, --OOH, --C(NH)NH.sub.2,
--NHC(NH)NH.sub.2, --C(S)NH.sub.2, --NHC(S)NH.sub.2, --NHC(O)NH.sub.2,
--S(O.sub.2)H, --S(O)H, --NH.sub.2, --C(O)NH.sub.2, --OC(O)NH.sub.2,
--NHC(O)H, --NHC(O)OH, --C(O)NHC(O)H, --OS(O.sub.2)H, --OS(O)H, --OSH,
--SC(O)H, --S(O)C(O)OH, --SO.sub.2C(O)OH, --NHSH, --NHS(O)H,
--NHSO.sub.2H, --C(O)SH, --C(O)S(O)H, --C(O)S(O.sub.2)H, --C(S)H,
--C(S)OH, --C(SO)OH, --C(SO.sub.2)OH, --NHC(S)H, --OC(S)H, --OC(S)OH,
--OC(SO.sub.2)H, --S(O.sub.2)NH.sub.2, --S(O)NH.sub.2, --SNH.sub.2,
--NHCS(O.sub.2)H, --NHC(SO)H, --NHC(S)H, and --SH groups unsubstituted or
substituted with one or more suitable substituents independently selected
from the group consisting of halogens, .dbd.O, --NO.sub.2, --CN,
--(CH.sub.2).sub.z--CN where z is a whole integer, preferably from 0 to
4, --OR.sub.c, --NR.sub.cOR.sub.c, --NR.sub.cR.sub.c, --C(O)NR.sub.c,
--C(O)OR.sub.c, --C(O)R.sub.c, --NR.sub.cC(O)NR.sub.cR.sub.c,
--NR.sub.cC(O)R.sub.c, --OC(O)OR.sub.c, --OC(O)NR.sub.cR.sub.c,
--SR.sub.c, unsubstituted alkyl, unsubstituted alkenyl, unsubstituted
alkynyl, unsubstituted aryl, unsubstituted cycloalkyl, unsubstituted
heterocycloalkyl, and unsubstituted heteroaryl, or two or more
substituents cyclize to form a fused or spiro polycyclic cycloalkyl,
heterocycloalkyl, aryl, or heteroaryl group, where each R.sub.c is
independently selected from hydrogen, unsubstituted alkyl, unsubstituted
alkenyl, unsubstituted alkynyl, unsubstituted aryl, unsubstituted
cycloalkyl, unsubstituted heterocycloalkyl, and unsubstituted heteroaryl,
or two or more R.sub.c groups together cyclize to form part of a
heteroaryl or heterocycloalkyl group unsubstituted or substituted with an
unsubstituted alkyl group;
[0011] (c) n, is 0, 1, 2, 3 or 4;
[0012] (d) n.sub.2 is 0, 1, 2, 3 or 4;
[0013] (e) n.sub.3 is 0, 1, 2, 3 or 4;
[0014] (f) Z.sub.a is a bond or is selected from S, O, N, NR.sub.c,
C(O)NR.sub.c, NR.sub.cC(O), and CR.sub.c, wherein R.sub.c is a suitable
substituent selected from hydrogen, unsubstituted alkyl, unsubstituted
alkenyl, unsubstituted alkynyl, unsubstituted aryl, unsubstituted
cycloalkyl, unsubstituted heterocycloalkyl, or unsubstituted heteroaryl
group; and
[0015] (g) W.sub.a is S or O;
[0016] or a pharmaceutically acceptable salt, pharmaceutically acceptable
N-oxide, isomer, derivative, pharmaceutically active metabolite,
pharmaceutically acceptable prodrug, or pharmaceutically acceptable
solvate thereof.
[0017] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 2
[0018] wherein:
[0019] M is substituted or unsubstituted heteroaryl, or substituted or
unsubstituted aryl;
[0020] N is a substituted or unsubstituted aryl, or substituted or
unsubstituted hetroaryl; and
[0021] K is 3
[0022] Y is O or S;
[0023] each R.sub.k is independently H, halogen, substituted or
unsubstituted alkyl, --OH, substituted or unsubstituted alkoxy,
--OC(O)R.sub.2, --NO.sub.2, --N(R.sub.2).sub.2, --SR.sub.2,
--C(O)R.sub.2, --C(O).sub.2R.sub.2, --C(O)N(R.sub.2).sub.2, or
--N(R.sub.2)C(O)R.sub.2,
[0024] each R.sub.2 is independently H, substituted or unsubstituted
alkyl, substituted or unsubstituted cycloalkyl, substituted or
unsubstituted heterocyclyl, substituted or unsubstituted aryl, or
substituted or unsubstituted heteroaryl; or wherein two R.sub.2 groups
are linked together by an optionally substituted alkylene; and
[0025] each n is independently 0, 1, 2, 3 or 4;
[0026] or an active metabolite, or a pharmaceutically acceptable prodrug,
isomer, pharmaceutically acceptable salt or solvate thereof.
[0027] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 4
[0028] wherein:
[0029] each Z is independently C, CR.sub.3, N, NR.sub.3, O, or S, provided
that no more than two Z's are heteroatoms and wherein no two adjacent Z's
are O or S,
[0030] where R.sub.3 is H, substituted or unsubstituted alkyl, substituted
or unsubstituted cycloalkyl, substituted or unsubstituted heteroaryl, or
substituted or unsubstituted aryl; and
[0031] each R.sub.1 is independently H, halogen, substituted or
unsubstituted alkyl, substituted or unsubstituted alkoxy, substituted or
unsubstituted cycloalkyl, substituted or unsubstituted heterocyclyl,
substituted or unsubstituted aryl, substituted or unsubstituted
heteroaryl, --OR.sub.c --OH, --OC(O)R.sub.c, --NO.sub.2,
--N(R.sub.c).sub.2, --SR.sub.c, S(O).sub.jR.sub.c where j is 1 or 2,
--NR.sub.cC(O)R.sub.c, --C(O)N(R.sub.c).sub.2, --C(O).sub.2R.sub.c, or
--C(O)R.sub.c; or two adjacent R.sub.1's, are taken together to form a
substituted or unsubstituted aryl or heteroaryl,
[0032] each R.sub.c is independently H, substituted or unsubstituted
alkyl, substituted or unsubstituted cycloalkyl, substituted or
unsubstituted aryl, or substituted or unsubstituted heteroaryl.
[0033] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 5
[0034] wherein K is 6
[0035] each R.sub.k is independently H, halogen, substituted or
unsubstituted alkyl, or substituted or unsubstituted alkoxy.
[0036] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 7
[0037] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 8
[0038] wherein Z.sub.1 is CR.sub.3 or N; and Z.sub.2 is O or S.
[0039] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 9
[0040] wherein:
[0041] each R.sub.1 is independently H, halogen, substituted or
unsubstituted alkyl, substituted or unsubstituted alkoxy, substituted or
unsubstituted cycloalkyl, substituted or unsubstituted heterocyclyl,
substituted or unsubstituted aryl, substituted or unsubstituted
heteroaryl, --OR.sub.c --OH, --OC(O)R.sub.c, --NO.sub.2,
--N(R.sub.c).sub.2, --SR.sub.c, S(O).sub.jR.sub.c where j is 1 or 2,
--NR.sub.cC(O)R.sub.c, --C(O) N(R.sub.c).sub.2, C(O).sub.2R.sub.c, or
--C(O)R.sub.c; or two adjacent R.sub.1's are taken together to form a
substituted or unsubstituted aryl or heteroaryl; and
[0042] each R.sub.2 is independently H or substituted or unsubstituted
alkyl.
[0043] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 10
[0044] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 11
[0045] wherein Z.sub.1 is O or S; and Z.sub.2 is CR.sub.3 or N.
[0046] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 12
[0047] wherein:
[0048] each R.sub.1 is independently H, halogen, substituted or
unsubstituted alkyl, substituted or unsubstituted alkoxy, substituted or
unsubstituted cycloalkyl, substituted or unsubstituted heterocyclyl,
substituted or unsubstituted aryl, substituted or unsubstituted
heteroaryl, --OR.sub.c --OH, --OC(O)R.sub.c, --NO.sub.2,
--N(R.sub.c).sub.2, --SR.sub.c, S(O).sub.jR.sub.c where j is 1 or 2,
--NR.sub.cC(O)R.sub.c, --C(O) N(R.sub.c).sub.2, C(O).sub.2R.sub.c, or
--C(O)R.sub.c; or two adjacent R.sub.1's are taken together to form a
substituted or unsubstituted aryl or heteroaryl, and
[0049] each R.sub.2 is independently H or substituted or unsubstituted
alkyl.
[0050] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 13
[0051] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 14
[0052] wherein:
[0053] L is a linker selected from the group consisting of a covalent
bond, substituted or unsubstituted alkenylene, substituted or
unsubstituted alkylene, --C(O)NH--, --C(O)--, --NH--, --O--, --S--,
--O(substituted or unsubstituted alkylene)-, --N(substituted or
unsubstituted alkylene)-, --C(O)NH(substituted or unsubstituted
alkylene)-, --C(O)NH(substituted or unsubstituted alkenylene)-,
--NHC(O)(substituted or unsubstituted alkylene)-, --NHC(O)(substituted or
unsubstituted alkenylene)-, --C(O)(substituted or unsubstituted
alkenylene)-, and --NHC(O)(substituted or unsubstituted
alkylene)S(substituted or unsubstituted alkylene)C(O)NH--; and
[0054] T is a mono-, bi-, or tricyclic, substituted or unsubstituted
cycloalkyl, heterocyclyl, aryl, or heteroaryl.
[0055] In some embodiments, T is 15
[0056] wherein A is a substituted or unsubstituted five or six-membered
heterocyclyl, aryl, or heteroaryl; and B is a substituted or
unsubstituted five or six-membered heterocyclene, arylene, or
heteroarylene, wherein A and B together form a fused two ring moiety. In
other embodiments, T of said compound is a tricyclic, substituted or
unsubstituted aryl, heterocyclyl, or heteroaryl.
[0057] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 16
[0058] In some embodiments, L of said compound is a covalent bond,
--C(O)NH(substituted or unsubstituted alkylene), --O(substituted or
unsubstituted alkylene)-, --C(O)NH--, or --NHC(O)(alkylene)-. In other
embodiments, B of said compound is a substituted or unsubstituted
five-membered heteroarylene. In still other embodiments, B of said
compound is a substituted or unsubstituted 6-membered arylene or
heteroarylene.
[0059] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 17
[0060] wherein:
[0061] L is a linker selected from the group consisting of a covalent
bond, substituted or unsubstituted alkenylene, substituted or
unsubstituted alkylene, --C(O)NH--, --C(O)--, --NH--, --O--, --S--,
--O(substituted or unsubstituted alkylene)-, --N(substituted or
unsubstituted alkylene)-, --C(O)NH(substituted or unsubstituted
alkylene)-, --C(O)NH(substituted or unsubstituted alkenylene)-
--NHC(O)(substituted or unsubstituted alkylene)-, --NHC(O)(substituted or
unsubstituted alkenylene)-, --C(O)(substituted or unsubstituted
alkenylene)-, and --NHC(O)(substituted or unsubstituted
alkylene)S(substituted or unsubstituted alkylene)C(O)NH--; and
[0062] each of X.sub.1-X.sub.5 is independently C, CR, N, NR, S, or O,
wherein no more than three of X.sub.1-X.sub.5 is a heteroatom, and no two
adjacent ring atoms are O or S; where
[0063] each R is independently H, halogen, substituted or unsubstituted
alkyl, --OH, substituted or unsubstituted alkoxy, --OC(O)R.sub.d,
--NO.sub.2, --N(R.sub.d).sub.2, --SR.sub.d, --S(O).sub.jR.sub.d where j
is 1 or 2, --NR.sub.d C(O)R.sub.d, --C(O).sub.2R.sub.d,
--C(O)N(R.sub.d).sub.2 or --C(O)R.sub.d, or two adjacent R's are taken
together to form a substituted or unsubstituted aryl or hetroaryl, where
[0064] each R.sub.d is independently H, substituted or unsubstituted
alkyl, substituted or unsubstituted cycloalkyl, substituted or
unsubstituted aryl or substituted or unsubstituted heteroaryl.
[0065] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 18
[0066] In some embodiments, L of said compound is a covalent bond,
--C(O)NH--, or --O(substituted or unsubstituted alkylene)-. In other
embodiments, 19
[0067] of said compound is selected from the group consisting of: 20
[0068] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 21
[0069] L is a linker selected from the group consisting of a covalent
bond, substituted or unsubstituted alkenylene, substituted or
unsubstituted alkylene, --C(O)NH--, --C(O)--, --NH--, --O--, --S--,
--O(substituted or unsubstituted alkylene)-, --N(substituted or
unsubstituted alkylene)-, --C(O)NH(substituted or unsubstituted
alkylene)-, --C(O)NH(substituted or unsubstituted alkenylene)-
--NHC(O)(substituted or unsubstituted alkylene)-, --NHC(O)(substituted or
unsubstituted alkenylene)-, --C(O)(substituted or unsubstituted
alkenylene)-, and --NHC(O)(substituted or unsubstituted
alkylene)S(substituted or unsubstituted alkylene)C(O)NH--; and
[0070] each of X.sub.1-X.sub.5 is independently C, CR, N, NR, S, or O,
wherein no more than three of X.sub.1-X.sub.5 is a heteroatom, and no two
adjacent ring atoms are O or S; where
[0071] each R is independently H, halogen, substituted or unsubstituted
alkyl, --OH, substituted or unsubstituted alkoxy, --OC(O)R.sub.d,
--NO.sub.2, --N(R.sub.d).sub.2, --SR.sub.d, --S(O).sub.jR.sub.d where j
is 1 or 2, --NR.sub.d C(O)R.sub.d, --C(O).sub.2R.sub.d,
--C(O)N(R.sub.d).sub.2 or --C(O)R.sub.d, or two adjacent R's are taken
together to form a substituted or unsubstituted aryl or hetroaryl, where
[0072] each R.sub.d is independently H, substituted or unsubstituted
alkyl, substituted or unsubstituted cycloalkyl, substituted or
unsubstituted aryl or substituted or unsubstituted heteroaryl.
[0073] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 22
[0074] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 23
[0075] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 24
[0076] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 25
[0077] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 26
[0078] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 27
[0079] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 28
[0080] In some embodiments, L of said compound is --NHC(O)--,
--NHC(O)(substituted or unsubstituted alkylene)-, --C(O)NH(substituted or
unsubstituted alkylene), --C(O)NH(substituted or unsubstituted
alkenylene), or --NHC(O)(substituted or unsubstituted alkenylene)-. In
other embodiments, L of said compound is --O-- or --O(substituted or
unsubstituted alkylene)-. In still other embodiments, L of said compound
is -(substituted or unsubstituted alkylene)- or --NHC(O)(alkylene)S(alkyl-
ene)C(O)NH--.
[0081] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 29
[0082] wherein:
[0083] L.sub.1 is a linker selected from the group consisting of a
covalent bond, substituted or unsubstituted alkenylene, substituted or
unsubstituted alkylene, --C(O)NH--, --C(O)--, --NH--, --O--, --S--,
--O(substituted or unsubstituted alkylene)-, --N(substituted or
unsubstituted alkylene)-, --C(O)NH(substituted or unsubstituted
alkylene)-, --C(O)NH(substituted or unsubstituted alkenylene)-,
--NHC(O)(substituted or unsubstituted alkylene)-, --NHC(O)(substituted or
unsubstituted alkenylene)-, --C(O)(substituted or unsubstituted
alkenylene)-, and --NHC(O)(substituted or unsubstituted
alkylene)S(substituted or unsubstituted alkylene)C(O)NH--;
[0084] U is a substituted or unsubstituted cycloalkyl, hetrocycloalkyl,
aryl, or heteroaryl; and
[0085] V is a substituted or unsubstituted cycloalkylene, heterocyclene,
arylene, or heteroarylene;
[0086] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 30
[0087] In some embodiments, L.sub.1 of said compound is a bond,
--O(substituted or unsubstituted alkylene)-, -(substituted or
unsubstituted alkylene)-, or --S--; and L of said compound is a covalent
bond, --C(O)NH--, --C(O)NH(substituted or unsubstituted alkylene), or
--NHC(O)(substituted or unsubstituted alkylene)-. In other embodiments, V
of said compound is substituted or unsubstituted 5-membered
heteroarylene.
[0088] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 31
[0089] wherein:
[0090] each of X.sub.1-X.sub.4 is independently C, CR, or N, wherein no
more than two of X.sub.1-X.sub.5 is N; where
[0091] each R is independently H, halogen, substituted or unsubstituted
alkyl, --OH, substituted or unsubstituted alkoxy, --OC(O)R.sub.d,
--NO.sub.2, --N(R.sub.d).sub.2, --SR.sub.d, --S(O).sub.jR.sub.d where j
is 1 or 2, --NR.sub.d C(O)R.sub.d, --C(O).sub.2R.sub.d,
--C(O)N(R.sub.d).sub.2 or --C(O)R.sub.d, or two adjacent R's are taken
together to form a substituted or unsubstituted aryl or hetroaryl, where
[0092] each R.sub.d is independently H, substituted or unsubstituted
alkyl, substituted or unsubstituted cycloalkyl, substituted or
unsubstituted aryl or substituted or unsubstituted heteroaryl.
[0093] In some embodiments, U of said compound is substituted or
unsubstituted pyrimidinyl or pyridinyl. In other embodiments, U of said
compound is substituted or unsubstituted phenyl.
[0094] Provided herein are compositions and methods for treating a disease
comprising administering to a subject in need thereof an effective amount
of a c-kit modulating compound having the structure: 32
[0095] wherein T is substituted or unsubstituted cycloalkyl or
heterocylyl.
[0096] The compounds and compositions disclosed herein may be used for the
prevention or treatment of cancers such as stomach, gastric, bone, ovary,
colon, lung, brain, larynx, lymphatic system, genitourinary tract,
ovarian, squamous cell carcinoma, astrocytoma, Kaposi's sarcoma,
glioblastoma, lung cancer, bladder cancer, head and neck cancer,
melanoma, ovarian cancer, prostate cancer, breast cancer, small-cell lung
cancer, leukemia, glioma, colorectal cancer, genitourinary cancer
gastrointestinal cancer, or pancreatic cancer. In particular, the cancer
is acute myelogenous leukemia (AML), B-precursor cell acute lymphoblastic
leukemias, myelodysplastic leukemias, T-cell acute lymphoblastic
leukemias, and chronic myelogenous leukemias (CMLs).
[0097] Compositions and methods for treating a disease comprising
administering to a subject in need thereof an effective amount of a Stem
Cell Factor (SCF), c-kit, receptor modulating compound are provided
herein. In one embodiment, the disease is cancer. In other embodiments,
the cancer is a malignant tumor, or a hematologic malignancy such as
leukemia and lymphoma. In some embodiments, the cancer is small-cell lung
cancer, or breast cancer. In some embodiments, the leukemia is acute
myelogenous leukemia (AML). In some embodiments, the malignant tumor is a
germ cell tumor, a mast cell tumor, a gastrointestinal stromal tumor
(GIST), melanoma, or a neuroblastoma.
[0098] These and other aspects of the present invention will become
evident upon reference to the following detailed description. In
addition, various references are set forth herein which describe in more
detail certain procedures or compositions, and are incorporated by
reference in their entirety.
DISCLOSURE OF THE INVENTION
[0099] To more readily facilitate an understanding of the invention and
its preferred embodiments, the meanings of terms used herein will become
apparent from the context of this specification in view of common usage
of various terms and the explicit definitions of other terms provided in
the glossary below or in the ensuing description.
[0100] Glossary of Terms
[0101] Unless otherwise stated, the following terms used in this
application, including the specification and claims, have the definitions
given below. It must be noted that, as used in the specification and the
appended claims, the singular forms "a," "an" and "the" include plural
referents unless the context clearly dictates otherwise. Definition of
standard chemistry terms may be found in reference works, including Carey
and Sundberg (1992) "ADVANCED ORGANIC CHEMISTRY 3.sup.RD ED." Vols. A and
B, Plenum Press, New York. Unless otherwise indicated, conventional
methods of mass spectroscopy, NMR, HPLC, protein chemistry, biochemistry,
recombinant DNA techniques and pharmacology, within the skill of the art
are employed.
[0102] The term "modulator" means a molecule that interacts with a target
either directly or indirectly. The interactions include, but are not
limited to, agonist, antagonist, and the like.
[0103] The term "agonist" means a molecule such as a compound, a drug, an
enzyme activator or a hormone that enhances the activity of another
molecule or the activity of a receptor site etiehr directly or
indirectly.
[0104] The term "antagonist" means a molecule such as a compound, a drug,
an enzyme inhibitor, or a hormone that diminishes or prevents the action
of another molecule or the activity of a receptor site either directly or
indirectly.
[0105] The terms "effective amount" or "therapeutically effective amount"
refer to a sufficient amount of the agent to provide the desired
biological result. That result can be reduction and/or alleviation of the
signs, symptoms, or causes of a disease, or any other desired alteration
of a biological system. For example, an "effective amount" for
therapeutic use is the amount of the composition comprising a compound as
disclosed herein required to provide a clinically significant decrease in
a disease. An appropriate "effective" amount in any individual case may
be determined by one of ordinary skill in the art using routine
experimentation.
[0106] As used herein, the terms "treat" or "treatment" are synonymous
with the term "prevent" and are meant to indicate a postponement of
development of diseases, preventing the development of diseases, and/or
reducing severity of such symptoms that will or are expected to develop.
Thus, these terms include ameliorating existing disease symptoms,
preventing additional symptoms, ameliorating or preventing the underlying
metabolic causes of symptoms, inhibiting the disorder or disease, e.g.,
arresting the development of the disorder or disease, relieving the
disorder or disease, causing regression of the disorder or disease,
relieving a condition caused by the disease or disorder, or stopping the
symptoms of the disease or disorder.
[0107] By "pharmaceutically acceptable" or "pharmacologically acceptable"
is meant a material which is not biologically or otherwise undesirable,
i.e., the material may be administered to an individual without causing
any undesirable biological effects or interacting in a deleterious manner
with any of the components of the composition in which it is contained.
[0108] "Carrier materials" include any commonly used excipients in
pharmaceutics and should be selected on the basis of compatibility and
the release profile properties of the desired dosage form. Exemplary
carrier materials include, e.g., binders, suspending agents,
disintegration agents, filling agents, surfactants, solubilizers,
stabilizers, lubricants, wetting agents, diluents, and the like.
"Pharmaceutically compatible carrier materials" may comprise, e.g.,
acacia, gelatin, colloidal silicon dioxide, calcium glycerophosphate,
calcium lactate, maltodextrin, glycerine, magnesium silicate, sodium
caseinate, soy lecithin, sodium chloride, tricalcium phosphate,
dipotassium phosphate, sodium stearoyl lactylate, carrageenan,
monoglyceride, diglyceride, pregelatinized starch, and the like. See,
e.g., Remington: The Science and Practice of Pharmacy, Nineteenth Ed
(Easton, Pa.: Mack Publishing Company, 1995); Hoover, John E.,
Remington's Pharmaceutical Sciences, Mack Publishing Co., Easton, Pa.
1975; Liberman, H. A. and Lachman, L., Eds., Pharmaceutical Dosage Forms,
Marcel Decker, New York, N.Y., 1980; and Pharmaceutical Dosage Forms and
Drug Delivery Systems, Seventh Ed. (Lippincott Williams & Wilkins 1999).
[0109] As used herein, the term "subject" encompasses mammals and
non-mammals. Examples of mammals include, but are not limited to, any
member of the Mammalian class: humans, non-human primates such as
chimpanzees, and other apes and monkey species; farm animals such as
cattle, horses, sheep, goats, swine; domestic animals such as rabbits,
dogs, and cats; laboratory animals including rodents, such as rats, mice
and guinea pigs, and the like. Examples of non-mammals include, but are
not limited to, birds, fish and the like. In one embodiment of the
present invention, the mammal is a human.
[0110] The term "pharmaceutically acceptable salt" of a compound means a
salt that is pharmaceutically acceptable and that possesses the desired
pharmacological activity of the parent compound. Such salts, for example,
include: (1) acid addition salts, formed with inorganic acids such as
hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid,
phosphoric acid, and the like; or formed with organic acids such as
acetic acid, propionic acid, hexanoic acid, cyclopentanepropionic acid,
glycolic acid, pyruvic acid, lactic acid, malonic acid, succinic acid,
malic acid, maleic acid, fumaric acid, tartaric acid, citric acid,
benzoic acid, 3-(4-hydroxybenzoyl)benzoic acid, cinnamic acid, mandelic
acid, methanesulfonic acid, ethanesulfonic acid, 1,2-ethanedisulfonic
acid, 2-hydroxyethanesulfonic acid, benzenesulfonic acid,
2-naphthalenesulfonic acid, 4-methylbicyclo-[2.2.2]oct-2-ene-1-carboxylic
acid, glucoheptonic acid, 4,4,-methylenebis-(3-hydroxy-2-ene-1-carboxylic
acid), 3-phenylpropionic acid, trimethylacetic acid, tertiary butylacetic
acid, lauryl sulfuric acid, gluconic acid, glutamic acid,
hydroxynaphthoic acid, salicylic acid, stearic acid, muconic acid, and
the like; (2) salts formed when an acidic proton present in the parent
compound either is replaced by a metal ion, e.g., an alkali metal ion, an
alkaline earth ion, or an aluminum ion; or coordinates with an organic
base. Acceptable organic bases include ethanolamine, diethanolamine,
triethanolamine, tromethamine, N-methylglucamine, and the like.
Acceptable inorganic bases include aluminum hydroxide, calcium hydroxide,
potassium hydroxide, sodium carbonate, sodium hydroxide, and the like. It
should be understood that a reference to a pharmaceutically acceptable
salt includes the solvent addition forms or crystal forms thereof,
particularly solvates or polymorphs. Solvates contain either
stoichiometric or non-stoichiometric amounts of a solvent, and are often
formed during the process of crystallization. Hydrates are formed when
the solvent is water, or alcoholates are formed when the solvent is
alcohol. Polymorphs include the different crystal packing arrangements of
the same elemental composition of a compound. Polymorphs usually have
different X-ray diffraction patterns, infrared spectra, melting points,
density, hardness, crystal shape, optical and electrical properties,
stability, and solubility. Various factors such as the recrystallization
solvent, rate of crystallization, and storage temperature may cause a
single crystal form to dominate.
[0111] As used herein, the term "biological sample" is broadly defined to
include any cell, tissue, organ or multicellular organism. A biological
sample can be derived, for example, from cell or tissue cultures in
vitro. Alternatively, a biological sample can be derived from a living
organism or from a population of single cell organisms.
[0112] As used herein, the term "linker" means any divalent linking moiety
used to connect, join, or attach two chemical groups. For example,
linkers may be used to join two cyclic groups, such as to join two aryl
groups (e.g., phenyl), an aryl group to a cycloalkyl group, an aryl group
to a heterocyclyl group, a cycloalkyl group to a cycloalkyl group, a
cycloalkyl group to a heterocyclyl group, and the like. Representative
linkers include, but are not limited to, a covalent bond, -(substituted
or unsubstituted alkylene)-, -(substituted or unsubstituted alkenylene)-,
-(substituted or unsubstituted alkynylene)-, -(substituted or
unsubstituted cycloalkylene)-, -(substituted or unsubstituted
heterocyclylene)-, -(substituted or unsubstituted arylene)-, and
-(substituted or unsubstituted heteroarylene)-. Exemplary linkers also
include --O--, --S--, --S(O)--, --S(O).sub.2--, --S(O).sub.3--, --C(O)--,
--NH--, --N.dbd., --N.dbd.N--, .dbd.N--N.dbd., --C(O)NH--, --S(O)NH--,
and the like. Additional examples of linkers include --O(substituted or
unsubstituted alkylene)-, --N(substituted or unsubstituted alkylene)-,
--NHC(O)(substituted or unsubstituted alkylene)-, --C(O)(substituted or
unsubstituted alkenylene)-, --NHC(O)(substituted or unsubstituted
alkylene)S(substituted or unsubstituted alkylene)C(O)NH--,
--NHC(O)(substituted or unsubstituted alkenylene)-, and the like.
Linkers, as represented herein, embrace divalent moieties in any
chemically feasible directionality. For example, compounds comprising a
linker --C(O)NH-- which attaches two aryl groups, Ar.sub.1 to Ar.sub.2,
include Ar.sub.1--C(O)NH--Ar.sub.2 as well as Ar.sub.1--NHC(O)--Ar.sub.2.
[0113] As used herein, the term "halogen" includes fluorine, chlorine,
bromine, and iodine.
[0114] As used herein, "alkyl" means a straight chain or branched,
saturated or unsaturated chain having from 1 to 10 carbon atoms.
Representative saturated alkyl groups include, but are not limited to,
methyl, ethyl, n-propyl, isopropyl, 2-methyl-1-propyl, 2-methyl-2-propyl,
2-methyl-1-butyl, 3-methyl-1-butyl, 2-methyl-3-butyl,
2,2-dimethyl-1-propyl, 2-methyl-1-pentyl, 3-methyl-1-pentyl,
4-methyl-1-pentyl, 2-methyl-2-pentyl, 3-methyl-2-pentyl,
4-methyl-2-pentyl, 2,2-dimethyl-1-butyl, 3,3-dimethyl-1-butyl,
2-ethyl-1-butyl, butyl, isobutyl, t-butyl, n-pentyl, isopentyl,
neopentyl, and n-hexyl, and longer alkyl groups, such as heptyl, and
octyl. An alkyl group can be unsubstituted or substituted. Unsaturated
alkyl groups include alkenyl groups and alkynyl groups, discussed below.
Alkyl groups containing three or more carbon atoms may be straight,
branched or cyclized.
[0115] As used herein, "lower alkyl" means an alkyl having from 1 to 5
carbon atoms.
[0116] As used herein, an "alkenyl group" includes a monovalent unbranched
or branched hydrocarbon chain having one or more double bonds therein.
The double bond of an alkenyl group can be unconjugated or conjugated to
another unsaturated group. Suitable alkenyl groups include, but are not
limited to, (C.sub.2-C.sub.8) alkenyl groups, such as vinyl, allyl,
butenyl, pentenyl, hexenyl, butadienyl, pentadienyl, hexadienyl,
2-ethylhexenyl, 2-propyl-2-butenyl, 4-(2-methyl-3-butene)-pentenyl. An
alkenyl group can be unsubstituted or substituted.
[0117] As used herein, "alkynyl group" includes a monovalent unbranched or
branched hydrocarbon chain having one or more triple bonds therein. The
triple bond of an alkynyl group can be unconjugated or conjugated to
another unsaturated group. Suitable alkynyl groups include, but are not
limited to, (C.sub.2-C.sub.6) alkynyl groups, such as ethynyl, propynyl,
butynyl, pentynyl, hexynyl, methylpropynyl, 4-methyl-1-butynyl,
4-propyl-2-pentynyl, and 4-butyl-2-hexynyl. An alkynyl group can be
unsubstituted or substituted.
[0118] The terms "trifluoromethyl," "sulfonyl," and "carboxyl" include
CF.sub.3, SO.sub.3H, and CO.sub.2H, respectively.
[0119] The term "alkoxy" as used herein includes --O-(alkyl), wherein
alkyl is defined above.
[0120] As used herein, "alkoxyalkoxy" includes --O-(alkyl)-O-(alkyl),
wherein each "alkyl" is independently an alkyl group defined above.
[0121] As used herein, "alkoxycarbonyl" includes --C(O)O-(alkyl), wherein
alkyl is defined above.
[0122] As used herein, "alkoxycarbonylalkyl" includes
-(alkyl)-C(O)O-(alkyl), wherein alkyl is defined above.
[0123] As used herein, "alkoxyalkyl" means -(alkyl)-O-(alkyl), wherein
each "alkyl" is independently an alkyl group defined above.
[0124] As used herein, the term "aryl" (Ar) refers to a monocyclic, or
fused or spiro polycyclic, aromatic carbocycle (ring structure having
ring atoms that are all carbon) having from 3 to 12 ring atoms per ring.
Illustrative examples of aryl groups include the following moieties: 33
[0125] As used herein, the term "heteroaryl" (heteroAr) refers to a
monocyclic, or fused or spiro polycyclic, aromatic heterocycle (ring
structure having ring atoms selected from carbon atoms as well as
nitrogen, oxygen, and sulfur heteroatoms) having from 3 to 12 ring atoms
per ring. Illustrative examples of aryl groups include the following
moieties: 34
[0126] As used herein, the term "cycloalkyl" refers to a saturated or
partially saturated, monocyclic or fused or spiro polycyclic, carbocycle
having from 3 to 12 ring atoms per ring. Illustrative examples of
cycloalkyl groups include the following moieties: 35
[0127] As used herein, the term "heterocycloalkyl" refers to a monocyclic,
or fused or spiro polycyclic, ring structure that is saturated or
partially saturated and has from 3 to 12 ring atoms per ring selected
from C atoms and N, O, and S heteroatoms. Illustrative examples of
heterocycloalkyl groups include: 36
[0128] As used herein, "aryloxy" includes --O-aryl group, wherein aryl is
as defined above. An aryloxy group can be unsubstituted or substituted.
[0129] As used herein, "arylalkyl" includes -(alkyl)-(aryl), wherein alkyl
and aryl are defined above.
[0130] As used herein, "arylalkyloxy" includes --O-(alkyl)-(aryl), wherein
alkyl and aryl are defined above.
[0131] As used herein, "cycloalkyl" includes a monocyclic or polycyclic
saturated ring comprising carbon and hydrogen atoms and having no
carbon-carbon multiple bonds. Examples of cycloalkyl groups include, but
are not limited to, (C.sub.3-C.sub.7)cycloalkyl groups, such as
cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, and cycloheptyl, and
saturated cyclic and bicyclic terpenes. A cycloalkyl group can be
unsubstituted or substituted. Preferably, the cycloalkyl group is a
monocyclic ring or bicyclic ring.
[0132] As used herein, "cycloalkyloxy" includes --O-(cycloalkyl), wherein
cycloalkyl is defined above.
[0133] As used herein, "cycloalkylalkyloxy" includes
--O-(alkyl)-(cycloalkyl), wherein cycloalkyl and alkyl are defined above.
[0134] As used herein, the term "alkylidene" includes the divalent radical
--C.sub.nH.sub.2n--, wherein n is an integer from 1 to 8, such as
--CH.sub.2--, --CH.sub.2CH.sub.2--, --CH.sub.2--CH.sub.2--CH.sub.2--,
--CH.sub.2CH.sub.2CH.sub.2CH.sub.2--, --CH.sub.2CH.sub.2CH.sub.2CH.sub.2C-
H.sub.2--, and the like, unsubstituted or substituted with one or more
alkyl groups.
[0135] As used herein, "heteroatom-containing alkylidene" includes an
alkylidene wherein at least one carbon atom is replaced by a heteroatom
selected from nitrogen, oxygen, or sulfur, such as
--CH.sub.2CH.sub.2OCH.sub.2CH.sub.2--, and the like, unsubstituted or
substituted with one or more alkyl groups.
[0136] As used herein, "aminoalkoxy" includes --O-(alkyl)-NH.sub.2,
wherein alkyl is defined above.
[0137] As used herein, "mono-alkylamino" includes --NH(alkyl), wherein
alkyl is defined above.
[0138] As used herein, "di-alkylamino" includes --N(alkyl)(alkyl), wherein
each "alkyl" is independently an alkyl group defined above.
[0139] As used herein, "mono-alkylaminoalkoxy" includes
--O-(alkyl)-NH(alkyl), wherein each "alkyl" is independently an alkyl
group defined above.
[0140] As used herein, "di-alkylaminoalkoxy" includes
--O-(alkyl)N(alkyl)(alkyl), wherein each "alkyl" is independently an
alkyl group defined above.
[0141] As used herein, "arylamino" includes --NH(aryl), wherein aryl is
defined above.
[0142] As used herein, "arylalkylamino" includes --NH-(alkyl)-(aryl),
wherein alkyl and aryl are defined above.
[0143] As used herein, "alkylamino" includes --NH(alkyl), wherein alkyl is
defined above.
[0144] As used herein, "cycloalkylamino" includes --NH-(cycloalkyl),
wherein cyclohexyl is defined above.
[0145] As used herein, "cycloalkylalkylamino" includes
--NH-(alkyl)-(cycloalkyl), wherein alkyl and cycloalkyl are defined
above.
[0146] As used herein, "aminoalkyl" includes -(alkyl)-NH.sub.2, wherein
alkyl is defined above.
[0147] As used herein, "mono-alkylaminoalkyl" includes -(alkyl)-NH(alkyl),
wherein each "alkyl" is independently an alkyl group defined above.
[0148] As used herein, "di-alkylaminoalkyl" includes
-(alkyl)-N(alkyl)(alkyl), wherein each "alkyl" is independently an alkyl
group defined above.
[0149] The term "whole integer" is intended to include whole numbers. For
example, a whole integer from 0 to 4 would include 0, 1, 2, 3, and 4.
[0150] Sulfonyl refers to the presence of a sulfur atom, which is
optionally linked to another moiety such as an aliphatic group, an
aromatic group, an aryl group, an alicyclic group, or a heterocyclic
group. Aryl or alkyl sulfonyl moieties have the formula
--SO.sub.2R.sub.d, and alkoxy moieties have the formula --O--R.sub.d,
wherein R.sub.d is alkyl, as defined above, or is aryl wherein aryl is
phenyl, optionally substituted with 1-3 substituents independently
selected from halo (fluoro, chloro, bromo or iodo), lower alkyl (1-6C)
and lower alkoxy (1-6C).
[0151] As used herein, the term "substituted" means that the specified
group or moiety bears one or more suitable substituents.
[0152] As used herein, the term "unsubstituted" means that the specified
group bears no substituents.
[0153] As used herein, the term "optionally substituted" means that the
specified group is unsubstituted or substituted by one or more
substituents.
[0154] Molecular embodiments of the present invention may possess one or
more chiral centers and each center may exist in the R or S
configuration. The present invention includes all diastereomeric,
enantiomeric, and epimeric forms as well as the appropriate mixtures
thereof. Stereoisomers may be obtained, if desired, by methods known in
the art as, for example, the separation of stereoisomers by chiral
chromatographic columns. Additionally, the compounds of the present
invention may exist as geometric isomers. The present invention includes
all cis, trans, syn, anti, entgegen (E), and zusammen (Z) isomers as well
as the appropriate mixtures thereof.
[0155] Certain functional groups contained within the compounds of the
present invention can be substituted for bioisosteric groups, that is,
groups which have similar spatial or electronic requirements to the
parent group, but exhibit differing or improved physicochemical or other
properties. Suitable examples are well known to those of skill in the
art, and include, but are not limited to moieties described in Patini et
al., Chem, Rev, 1996, 96, 3147-3176 and references cited therein.
[0156] In addition, the compounds of the present invention can exist in
unsolvated as well as solvated forms with pharmaceutically acceptable
solvents such as water, ethanol, and the like. In general, the solvated
forms are considered equivalent to the unsolvated forms for the purposes
of the present invention.
[0157] To more readily facilitate an understanding of the invention and
its preferred embodiments, the meanings of terms used herein will become
apparent from the context of this specification in view of common usage
of various terms and the explicit definitions of other terms provided in
the glossary below or in the ensuing description.
[0158] Compounds
[0159] In one aspect, the present invention is directed to compounds,
compositions, and methods for treating conditions associated with
abnormal kinase activity. In one embodiment, compounds useful in the
invention are derivatives of isoxazoles, pyrazoles and isothiazoles. When
the compounds of the invention contain one or more chiral centers, the
invention includes optically pure forms as well as mixtures of
stereoisomers or enantiomers.
[0160] Thus, the invention provides methods for modulating various kinases
by providing an effective amount of a compound of the formulas described
herein.
[0161] Salts of the compounds may be used for therapeutic and prophylactic
purposes, where the salt is preferably a pharmaceutically acceptable
salt. Examples of pharmaceutically acceptable salts include those derived
from mineral acids, such as hydrochloric, hydrobromic, phosphoric,
metaphosphoric, nitric and sulphuric acids, and organic acids, such as
tartaric, acetic, trifluoroacetic, citric, malic, lactic, fumaric,
benzoic, glycolic, gluconic, succinic and methanesulphonic and
arylsulphonic, for example Q-toluenesulphonic, acids.
[0162] A "prodrug" refers to a drug or compound in which the
pharmacological action results from conversion by metabolic processes
within the body. Prodrugs are generally drug precursors that, following
administration to a subject and subsequent absorption, are converted to
an active, or a more active species via some process, such as conversion
by a metabolic pathway. Some prodrugs have a chemical group present on
the prodrug that renders it less active and/or confers solubility or some
other property to the drug. Once the chemical group has been cleaved
and/or modified from the prodrug the active drug is generated. Prodrugs
may be designed as reversible drug derivatives, for use as modifiers to
enhance drug transport to site-specific tissues. Additionally, prodrugs
can increase the effective water solubility of the therapeutic compound
for targeting to regions where water is the principal solvent. See, e.g.,
Fedorak et al., Am. J. Physiol., 269:G210-218 (1995); McLoed et al.,
Gastroenterol, 106:405-413 (1994); Hochhaus et al., Biomed. Chrom.,
6:283-286 (1992); J. Larsen and H. Bundgaard, Int. J. Pharmaceutics, 37,
87 (1987); J. Larsen et al., Int. J. Pharmaceutics, 47, 103 (1988);
Sinkula et al., J. Pharm. Sci., 64:181-210 (1975); T. Higuchi and V.
Stella, Pro-drugs as Novel Delivery Systems, Vol. 14 of the A.C.S.
Symposium Series; and Edward B. Roche, Bioreversible Carriers in Drug
Design, American Pharmaceutical Association and Pergamon Press, 1987.
Prodrug forms of the above described compounds, wherein the prodrug is
metabolized in vivo to produce a derivative as set forth above are
included within the scope of the claims. Indeed, some of the
above-described derivatives may be a prodrug for another derivative or
active compound.
[0163] The invention further provides for the optical isomers of the
compounds disclosed herein, especially those resulting from the chiral
carbon atoms in the molecule. In additional embodiments of the invention,
mixtures of enantiomers and/or diastereoisomers, resulting from a single
preparative step, combination, or interconversion may also be useful for
the applications described herein.
[0164] In another aspect, compositions containing the above described
analogs and derivatives are provided. Preferably, the compositions are
formulated to be suitable for pharmaceutical or clinical use by the
inclusion of appropriate carriers or excipients.
[0165] Groups such as carbonyl, carboxyl, alkoxy, amino, and cyano groups,
etc., as shown in the formula above, need not be directly bound to the
para position; they may be included elsewhere in the alkyl, alkenyl or
alkynyl substituent. Thus, also acceptable substituents are the following
representative forms:
[0166] --CH.sub.2NHCH.sub.3; --CH.sub.2OCH.sub.3; --CH.sub.2SCH.sub.3;
--NHCH.sub.3; --CH.sub.2CH.sub.3; --OCH.sub.2CH.sub.3;
--SCH.sub.2CH.sub.2CH.sub.3; --CH.dbd.CHCH.sub.2NH.sub.2;
--CH.sub.2CH.sub.2OH; 37
[0167] --CH.sub.2CH.sub.2CH.sub.2SH; --CH.sub.2OC(O)CH.sub.3;
--CH.sub.2NHC(O)CH.sub.2C(O)CH.sub.3; --NHC(O)CH.sub.2CH.sub.2CH.sub.3
[0168] each of which may further be substituted with a cycloalkyl,
heterocycloalkyl, aryl or heteroaryl group.
[0169] It will also be evident that these substituents include, for
example, trifluoromethyl, difluoromethyl and fluoromethyl (alkyl
substituted by halo) and trifluoromethoxy, difluoromethoxy and
fluoromethoxy (alkyl where one carbon is replaced by O and is further
substituted by halo).
[0170] Compounds of the invention which contain carboxyl groups or which
contain amino groups may be supplied in the forms of their
pharmaceutically acceptable salts. Pharmaceutically acceptable salts of
carboxylic acids include inorganic salts such as salts of sodium,
potassium, calcium, magnesium and the like or salts formed with organic
bases such as caffeine. Salts of amines are acid addition salts formed
from inorganic acids such as hydrochloric, sulfuric, phosphoric acids or
may be salts of organic acids such as acetates, maleates, propionates,
and the like.
[0171] The invention also provides prodrug forms of the compounds
described herein, wherein the prodrug is metabolized in vivo to produce a
derivative as set forth above. Indeed, some of the above described
derivatives may be a prodrug for another derivative or active compound.
The invention further provides for the optical isomers of the compounds
disclosed herein, especially those resulting from the chiral carbon atoms
in the molecule. In additional embodiments of the invention, mixtures of
enantiomers and/or diastereoisomers, resulting from a single preparative
step, combination, or interconversion are provided.
[0172] In another aspect of the invention, compositions containing the
above described analogs and derivatives are provided. Preferably, the
compositions are formulated to be suitable for pharmaceutical or clinical
use by the inclusion of appropriate carriers or excipients.
[0173] In yet another aspect of the invention, pharmaceutical formulations
are provided comprising at least one compound described above, or a
pharmaceutically acceptable salt or solvate thereof, together with one or
more pharmaceutically acceptable carriers, diluents or excipients.
[0174] The compounds of the invention, especially when used in the
invention methods and compositions, may be "conjugated"--that is they may
be coupled to additional moieties that do not destroy their ability to
modulate kinases. For example, the compounds might be coupled to a label
such as a radioactive label, a fluorescent label and the like, or may be
coupled to targeting agents such as antibodies or fragments, or to
fragments to aid purification such as FLAG or a histidine tag. The
compounds may also be coupled to specific binding partners such as biotin
for use in assay procedures or to moieties that alter their biological
half-lives such as polyethylene glycol. Thus, the methods of the
invention employ the invention compounds per se as well as conjugates
thereof.
[0175] Synthesis of Compounds
[0176] Compounds of the present invention may be synthesized using
standard synthetic techniques known to those of skill in the art or using
methods known in the art in combination with methods described herein.
See, e.g., March, ADVANCED ORGANIC CHEMISTRY 4.sup.th Ed., (Wiley 1992);
Carey and Sundberg, ADVANCED ORGANIC CHEMISTRY 3.sup.rd Ed., Vols. A and
B (Plenum 1992), and Green and Wuts, PROTECTIVE GROUPS IN ORGANIC
SYNTHESIS 2.sup.nd Ed. (Wiley 1991). General methods for the preparation
of compound as disclosed herein may be derived from known reactions in
the field, and the reactions may be modified by the use of appropriate
reagents and conditions, as would be recognized by the skilled person,
for the introduction of the various moieties found in the formulae as
provided herein.
[0177] The compounds of the invention are synthesized by methods well
known in the art. The compounds of the invention are ureas or cyclic
forms thereof and can be synthesized using generally known procedures for
urea synthesis.
[0178] In one group of methods, an amine is reacted with an isocyanate in
an aprotic solvent. Typically, in some embodiments, a molar excess of the
amine is used in the presence of an aprotic solvent and the reaction is
conducted at room temperature. The reaction mixture is then poured into
water and precipitated with salt to recover the crude product which is
then purified according to standard methods.
[0179] In alternative methods, the ureas are formed from two separate
amine reactants in the presence of a condensing agent such as
1,1,carbonyldiimidazole (CDI) in the presence of an inert nonpolar
solvent such as dichloromethane. One of the amines is first added to a
solution of CDI in solvent under cooling conditions and then stirred at
room temperature with the other amine. After removal of solvent, the
crude product can be purified using standard procedures.
[0180] In still another method, one of the amines is added in an aprotic
solvent to a solution of triphosgene and then treated with the other
amine reactant dissolved in an inert solvent in the presence of base such
as triethylamine. After reaction at room temperature, the mixture may be
diluted with, for example, ethylacetate and washed with water and brine,
dried and purified.
[0181] In still another method, one of the amine components is treated
with 4-nitrophenylchloroformate in the presence of mild base in a solvent
such as N-methylpyrrolidone (NMP). The other amine is then added and the
reaction mixture heated, then cooled, poured into water, extracted into
chloroform and further purified.
[0182] Alternatively, the urea may be formed by the reaction of an amine
with the counterpart halo acylamine which is formed from the parent amine
by treatment with phosgene and base in an inert solvent such as methylene
dichloride or by reacting an amine with its counterpart amine with an
acyl amine containing an alternate leaving group formed by reaction of
that amine with 4-nitrophenylchloroformate in the presence of an amine
base and in an inert solvent.
[0183] Details of these methods can be found in Matsuno et al. J. Med.
Chem. 45:3057-66 (2002); Matsuno et al. J. Med. Chem. 45:4513-23 (2002);
and and Pandley et al., J. Med. Chem. 45:3772-93 (2002).
[0184] Cyclized forms of the ureas may be obtained by treating the formed
urea with dibromo derivatives of the bridge, typically in the presence of
a strong base and in an inert aprotic polar solvent.
[0185] The ureas may be converted to thioureas by treating with Lawesson's
reagent in the presence of toluene.
[0186] For compounds having the moiety Ar.sup.1--L--Ar.sup.2 is obtained
by first protecting the amino group of p-hydroxy aniline destined to
become Ar.sup.1 with a protecting agent such as Boc and then coupling the
hydroxy group of Ar.sup.1 to an aryl alkyl halide. This coupling is
conducted in the presence of strong base and in an aprotic solvent. After
deprotection, the urea is formed by reaction with the isoxazole
isocyanate. These techniques are exemplified below.
[0187] Selected examples of covalent linkages and precursor functional
groups which yield them are given in the Table entitled "Examples of
Covalent Linkages and Precursors Thereof." Precursor functional groups
are shown as electrophilic groups and nucleophilic groups. The functional
group on the organic substance may be attached directly, or attached via
any useful spacer or linker as defined below.
1TABLE 1
Examples of Covalent Linkages and
Precursors Thereof
Covalent Linkage Product Electrophile
Nucleophile
Carboxamides Activated esters amines/anilines
Carboxamides acyl azides amines/anilines
Carboxamides acyl
halides amines/anilines
Esters acyl halides alcohols/phenols
Esters acyl nitriles alcohols/phenols
Carboxamides acyl nitriles
amines/anilines
Imines Aldehydes amines/anilines
Hydrazones
aldehydes or ketones Hydrazines
Oximes aldehydes or ketones
Hydroxylamines
Alkyl amines alkyl halides amines/anilines
Esters alkyl halides carboxylic acids
Thioethers alkyl halides
Thiols
Ethers alkyl halides alcohols/phenols
Thioethers
alkyl sulfonates Thiols
Esters alkyl sulfonates carboxylic acids
Ethers alkyl sulfonates alcohols/phenols
Esters Anhydrides
alcohols/phenols
Carboxamides Anhydrides amines/anilines
Thiophenols aryl halides Thiols
Aryl amines aryl halides Amines
Thioethers Azindines Thiols
Boronate esters Boronates Glycols
Carboxamides carboxylic acids amines/anilines
Esters
carboxylic acids Alcohols
hydrazines Hydrazides carboxylic acids
N-acylureas or Anhydrides carbodiimides carboxylic acids
Esters diazoalkanes carboxylic acids
Thioethers Epoxides Thiols
Thioethers haloacetamides Thiols
Ammotriazines halotriazines
amines/anilines
Triazinyl ethers halotriazines alcohols/phenols
Amidines imido esters amines/anilines
Ureas Isocyanates
amines/anilines
Urethanes Isocyanates alcohols/phenols
Thioureas isothiocyanates amines/anilines
Thioethers Maleimides
Thiols
Phosphite esters phosphoramidites Alcohols
Silyl
ethers silyl halides Alcohols
Alkyl amines sulfonate esters
amines/anilines
Thioethers sulfonate esters Thiols
Esters
sulfonate esters carboxylic acids
Ethers sulfonate esters Alcohols
Sulfonamides sulfonyl halides amines/anilines
Sulfonate
esters sulfonyl halides phenols/alcohols
[0188] In general, carbon electrophiles are susceptible to attack by
complementary nucleophiles, including carbon nucleophiles, wherein an
attacking nucleophile brings an electron pair to the carbon electrophile
in order to form a new bond between the nucleophile and the carbon
electrophile.
[0189] Suitable carbon nucleophiles include, but are not limited to alkyl,
alkenyl, aryl and alkynyl Grignard, organolithium, organozinc, alkyl-,
alkenyl, aryl- and alkynyl-tin reagents (organostannanes), alkyl-,
alkenyl-, aryl- and alkynyl-borane reagents (organoboranes and
organoboronates); these carbon nucleophiles have the advantage of being
kinetically stable in water or polar organic solvents. Other carbon
nucleophiles include phosphorus ylids, enol and enolate reagents; these
carbon nucleophiles have the advantage of being relatively easy to
generate from precursors well known to those skilled in the art of
synthetic organic chemistry. Carbon nucleophiles, when used in
conjunction with carbon electrophiles, engender new carbon-carbon bonds
between the carbon nucleophile and carbon electrophile.
[0190] Non-carbon nucleophiles suitable for coupling to carbon
electrophiles include but are not limited to primary and secondary
amines, thiols, thiolates, and thioethers, alcohols, alkoxides, azides,
semicarbazides, and the like. These non-carbon nucleophiles, when used in
conjunction with carbon electrophiles, typically generate heteroatom
linkages (C--X--C), wherein X is a hetereoatom, e. g, oxygen or nitrogen.
[0191] The term "protecting group" refers to chemical moieties that block
some or all reactive moieties and prevent such groups from participating
in chemical reactions until the protective group is removed. It is
preferred that each protective group be removable by a different means.
Protective groups that are cleaved under totally disparate reaction
conditions fulfill the requirement of differential removal. Protective
groups can be removed by acid, base, and hydrogenolysis. Groups such as
trityl, dimethoxytrityl, acetal and t-butyldimethylsilyl are acid labile
and may be used to protect carboxy and hydroxy reactive moieties in the
presence of amino groups protected with Cbz groups, which are removable
by hydrogenolysis, and Fmoc groups, which are base labile. Carboxylic
acid and hydroxy reactive moieties may be blocked with base labile groups
such as, without limitation, methyl, ethyl, and acetyl in the presence of
amines blocked with acid labile groups such as t-butyl carbamate or with
carbamates that are both acid and base stable but hydrolytically
removable.
[0192] Carboxylic acid and hydroxy reactive moieties may also be blocked
with hydrolytically removable protective groups such as the benzyl group,
while amine groups capable of hydrogen bonding with acids may be blocked
with base labile groups such as Fmoc. Carboxylic acid reactive moieties
may be protected by conversion to simple ester derivatives as exemplified
herein, or they may be blocked with oxidatively-removable protective
groups such as 2,4-dimethoxybenzyl, while co-existing amino groups may be
blocked with fluoride labile silyl carbamates.
[0193] Allyl blocking groups are useful in then presence of acid- and
base-protecting groups since the former are stable and can be
subsequently removed by metal or pi-acid catalysts. For example, an
allyl-blocked carboxylic acid can be deprotected with a
Pd.sub.0-catalyzed reaction in the presence of acid labile t-butyl
carbamate or base-labile acetate amine protecting groups. Yet another
form of protecting group is a resin to which a compound or intermediate
may be attached. As long as the residue is attached to the resin, that
functional group is blocked and cannot react. Once released from the
resin, the functional group is available to react.
[0194] Typically blocking/protecting groups may be selected from: 38
[0195] Other protecting groups are described in Greene and Wuts,
Protective Groups in Organic Synthesis, 3rd Ed., John Wiley & Sons, New
York, N.Y., 1999, which is incorporated herein by reference in its
entirety.
[0196] Biological Activity
[0197] Protein kinases (PKs) play a role in signal transduction pathways
regulating a number of cellular functions, such as cell growth,
differentiation, and cell death. PKs are enzymes that catalyze the
phosphorylation of hydroxy groups on tyrosine, serine and threonine
residues of proteins. Abnormal PK activity has been related to disorders
ranging from relatively non life threatening diseases such as psoriasis
to extremely virulent diseases such as glioblastoma (brain cancer). In
addition, a variety of tumor types have dysfunctional growth factor
receptor tyrosine kinases, resulting in inappropriate mitogenic
signaling. Protein kinases are believed to be involved in many different
cellular signal transduction pathways. In particular, protein tyrosine
kinases (PTK) are attractive targets in the search for therapeutic
agents, not only for cancer, but also against many other diseases.
Blocking or regulating the kinase phosphorylation process in a signaling
cascade may help treat conditions such as cancer or inflammatory
processes.
[0198] Protein tyrosine kinases are a family of tightly regulated enzymes,
and the aberrant activation of various members of the family is one of
the hallmarks of cancer. The protein-tyrosine kinase family includes
Bcr-Ab1 tyrosine kinase, and can be divided into subgroups that have
similar structural organization and sequence similarity within the kinase
domain. The members of the type III group of receptor tyrosine kinases
include the platelet-derived growth factor (PDGF) receptors (PDGF
receptors .alpha. and .beta.), colony-stimulating factor (CSF-1) receptor
(CSF-1R, c-Fms), FLT-3, and stem cell or steel factor receptor (c-kit).
[0199] The compounds, compositions, and methods provided herein are useful
to modulate the activity of kinases including, but not limited to, ERBB2,
ABL1, AURKA, CDK2, EGFR, FGFR1, LCK, MAPK14, PDGFR, KDR, ABL1, BRAF,
ERBB4, FLT3, KIT, and RAF1. In some embodiments, the compositions and
methods provided herein modulate the activity of a mutant kinase.
[0200] Inhibition by the compounds provided herein can be determined using
any suitable assay. In one embodiment, inhibition is determined in vitro.
In a specific embodiment, inhibition is assessed by phosphorylation
assays. Any suitable phosphorylation assay can be employed. For example,
membrane autophosphorylation assays, receptor autophosphorylation assays
in intact cells, and ELISA's can be employed. See, e.g., Gazit, et al.,
J. Med. Chem. (1996) 39:2170-2177, Chapter 18 in CURRENT PROTOCOLS IN
MOLECULAR BIOLOGY (Ausubel, et al., eds. 2001). Cells useful in such
assays include cells with wildtype or mutated forms. In one embodiment,
the wildtype is a kinase that is not constitutively active, but is
activated with upon dimerization. For example, the mutant FLT3 kinase is
constitutively active via internal tandem duplication mutations or point
mutations in the activation domain. Suitable cells include those derived
through cell culture from patient samples as well as cells derived using
routine molecular biology techniques, e.g., retroviral transduction,
transfection, mutagenesis, etc. Exemplary cells include Ba/F3 or 32Dc13
cells transduced with, e.g., MSCV retroviral constructs FLT3-ITD (Kelly
et al., 2002); Molm-13 and Molm14 cell line (Fujisaki Cell Center,
Okayama, Japan); HL60 (AML-M3), AML193 (AML-M5), KG-1, KG-1a, CRL-1873,
CRL-9591, and THP-1 (American Tissue Culture Collection, Bethesda, Md.);
or any suitable cell line derived from a patient with a hematopoietic
malignancy.
[0201] In some embodiments, the compounds described herein significantly
inhibit receptor tyrosine kinases. A significant inhibition of a receptor
tyrosine kinase activity refers to an IC.sub.50 of less than or equal to
100 .mu.M. Preferably, the compound can inhibit activity with an
IC.sub.50 of less than or equal to 50 .mu.M, more preferably less than or
equal to 10 .mu.M, more preferably less than 1 .mu.M, or less than 100
nM, most preferably less than 50 nM. Lower IC.sub.50s are preferred
because the IC.sub.50 provides an indication as to the in vivo
effectiveness of the compound. Other factors known in the art, such as
compound half-life, biodistribution, and toxicity should also be
considered for therapeutic uses. Such factors may enable a compound with
a lower IC.sub.50 to have greater in vivo efficacy than a compound having
a higher IC.sub.50. Preferably, a compound that inhibits activity is
administered at a dose where the effective tyrosine phosphorylation,
i.e., IC.sub.50, is less than its cytotoxic effects, LD.sub.50.
[0202] In some embodiments, the compounds selectively inhibit one or more
kinases. Selective inhibition of a kinase, such as FLT3, p38 kinase,
STK10, MKNK2, Bcr-Abl, c-kit, or PDGFR, is achieved by inhibiting
activity of one kinase, while having an insignificant effect on other
members of the superfamily.
[0203] C-kit
[0204] The Stem Cell Factor (SCF) receptor c-kit is a receptor protein
tyrosine kinase that initiates cell growth and proliferation signal
transduction cascades in response to SCF binding. c-kit is a 145-kD
transmembrane glycoprotein and is the normal cellular homolog of the
v-kit retroviral oncogene, It is also a member of the Type III
transmembrane receptor protein tyrosine kinase subfamily, which includes
the macrophage colony-stimulating factor-I receptor, also known as the
FMS receptor, the related FLT-3 receptor, and the platelet-derived growth
factor (PDGF) .alpha. and .beta. receptors. The c-kit gene product is
expressed in hematopoietic progenitor cells, mast cells, germ cells,
interstitial cells of Cajal (ICC), and some human tumors. Inactivating
mutations of c-kit or its ligand, Steel factor (SLF), have demonstrated
that the normal functional activity of the c-kit gene product is
essential for maintenance of normal hematopoeisis, melanogenesis,
genetogensis, and growth and differentiation of mast cells and ICC. SLF
is produce by human and murine hematopoietic stromal cells, including
endothelial cells, fibroblasts, and bone marrow-derived stromal cells.
[0205] In addition to its importance in normal cellular physiologic
activities, c-kit plays a role in the biological aspects of certain human
cancers, including germ cell tumors, mast cell tumors, gastrointestinal
stromal tumors (GIST), small-cell lung cancer, melanoma, breast cancer,
acute myelogenous leukemia (AML), and neuroblastoma. Proliferation of
tumor cell growth mediated by c-kit can occur by a specific mutation of
the c-kit polypeptide that results in ligand independent activation or by
autocrine stimulation of the receptor. In the former case, mutations that
cause constitutive activation of c-kit kinase activity in the absence of
SCF binding are implicated in malignant human cancers, including
gastrointestinal stromal tumors, germ cell tumors, mast cell tumors, and
myeloid leukemia's and in mastocytosis.
[0206] The activity of the c-kit receptor protein tyrosine kinase is
regulated in normal cells, and as discussed the deregulated c-kit kinase
activity is implicated in the pathogenesis of human cancers. In some
types of tumors, inhibition of c-kit activity reduces cellular
proliferation, suggesting a role for use of pharmacologic inhibitors of
c-kit in the treatment of c-kit dependent malignancies.
[0207] In one embodiment, compositions and methods provided herein are
effective to modulate the activity of c-kit. In other embodiments,
compositions and methods provided herein are effective to selectively
modulate the activity of c-kit.
[0208] Formulations
[0209] The compounds described herein can be used to prepare a medicament,
such as by formulation into pharmaceutical compositions for
administration to a subject using techniques generally known in the art.
A summary of such pharmaceutical compositions may be found, for example,
in Remington's Pharmaceutical Sciences, Mack Publishing Co., Easton, Pa.
The compounds of the invention can be used singly or as components of
mixtures. Preferred forms of the compounds are those for systemic
administration as well as those for topical or transdermal
administration. Formulations designed for timed release are also within
the scope of the invention. Formulation in unit dosage form is also
preferred for the practice of the invention.
[0210] In unit dosage form, the formulation is divided into unit doses
containing appropriate quantities of one or more compounds. The unit
dosage may be in the form of a package containing discrete quantities of
the formulation. Non-limiting examples are packeted tablets or capsules,
and powders in vials or ampoules.
[0211] The compounds described herein may be labeled isotopically (e.g.
with a radioisotope) or by any other means, including, but not limited
to, the use of chromophores or fluorescent moieties, bioluminescent
labels, or chemiluminescent labels. The compositions may be in
conventional forms, either as liquid solutions or suspensions, solid
forms suitable for solution or suspension in a liquid prior to use, or as
emulsions. Suitable excipients or carriers are, for example, water,
saline, dextrose, glycerol, alcohols,
aloe vera gel, allantoin, glycerin,
vitamin A and E oils, mineral oil, propylene glycol, PPG-2 myristyl
propionate, and the like. Of course, these compositions may also contain
minor amounts of nontoxic, auxiliary substances, such as wetting or
emulsifying agents, pH buffering agents, and so forth.
[0212] Methods for the preparation of compositions comprising the
compounds described herein include formulating the derivatives with one
or more inert, pharmaceutically acceptable carriers to form either a
solid or liquid. Solid compositions include, but are not limited to,
powders, tablets, dispersible granules, capsules, cachets, and
suppositories. Liquid compositions include solutions in which a compound
is dissolved, emulsions comprising a compound, or a solution containing
liposomes, micelles, or nanoparticles comprising a compound as disclosed
herein.
[0213] A carrier of the invention can be one or more substances which also
serve to act as a diluent, flavoring agent, solubilizer, lubricant,
suspending agent, binder, or tablet disintegrating agent. A carrier can
also be an encapsulating material.
[0214] In powder forms of the invention's compositions, the carrier is
preferably a finely divided solid in powder form which is interdispersed
as a mixture with a finely divided powder from of one or more compound.
In tablet forms of the compositions, one or more compounds is intermixed
with a carrier with appropriate binding properties in suitable
proportions followed by compaction into the shape and size desired.
Powder and tablet form compositions preferably contain between about 5 to
about 70% by weight of one or more compound. Carriers that may be used in
the practice of the invention include, but are not limited to, magnesium
carbonate, magnesium stearate, talc, lactose, sugar, pectin, dextrin,
starch, tragacanth, methyl cellulose, sodium carboxymethyl cellulose, a
low-melting wax, cocoa butter, and the like.
[0215] The compounds of the invention may also be encapsulated or
microencapsulated by an encapsulating material, which may thus serve as a
carrier, to provide a capsule in which the derivatives, with or without
other carriers, is surrounded by the encapsulating material. In an
analogous manner, cachets comprising one or more compounds are also
provided by the instant invention. Tablet, powder, capsule, and cachet
forms of the invention can be formulated as single or unit dosage forms
suitable for administration, optionally conducted orally.
[0216] In suppository forms of the compositions, a low-melting wax such
as, but not limited to, a mixture of fatty acid glycerides, optionally in
combination with cocoa butter is first melted. One or more compounds are
then dispersed into the melted material by, as a non-limiting example,
stirring. The non-solid mixture is then placed into molds as desired and
allowed to cool and solidify.
[0217] Non-limiting compositions in liquid form include solutions suitable
for oral or parenteral administration, as well as suspensions and
emulsions suitable for oral administration. Sterile aqueous based
solutions of one or more compounds, optionally in the presence of an
agent to increase solubility of the derivative(s), are also provided.
Non-limiting examples of sterile solutions include those comprising
water, ethanol, and/or propylene glycol in forms suitable for parenteral
administration. A sterile solution of the invention may be prepared by
dissolving one or more compounds in a desired solvent followed by
sterilization, such as by filtration through a sterilizing membrane
filter as a non-limiting example. In another embodiment, one or more
compounds are dissolved into a previously sterilized solvent under
sterile conditions.
[0218] A water based solution suitable for oral administration can be
prepared by dissolving one or more compounds in water and adding suitable
flavoring agents, coloring agents, stabilizers, and thickening agents as
desired. Water based suspensions for oral use can be made by dispersing
one or more compounds in water together with a viscous material such as,
but not limited to, natural or synthetic gums, resins, methyl cellulose,
sodium carboxymethyl cellulose, polyvinylpyrrolidone, and other
suspending agents known to the pharmaceutical field.
[0219] In therapeutic use, the compounds of the invention are administered
to a subject at dosage levels of from about 0.5 mg/kg to about 8.0 mg/kg
of body weight per day. For example, a human subject of approximately 70
kg, this is a dosage of from 35 mg to 560 mg per day. Such dosages,
however, may be altered depending on a number of variables, not limited
to the activity of the compound used, the condition to be treated, the
mode of administration, the requirements of the individual subject, the
severity of the condition being treated, and the judgment of the
practitioner.
[0220] The foregoing ranges are merely suggestive, as the number of
variables in regard to an individual treatment regime is large, and
considerable excursions from these recommended values are not uncommon.
[0221] Methods of Use
[0222] By modulating kinase activity, the compounds disclosed herein can
be used to treat a variety of diseases. Suitable conditions characterized
by undesirable protein-kinase activity can be treated by the compounds
presented herein. As used herein, the term "condition" refers to a
disease, disorder, or related symptom where inappropriate kinase activity
is present. In some embodiments, these conditions are characterized by
aggressive neovasculaturization including tumors, especially acute
myelogenous leukemia (AML), B-precursor cell acute lymphoblastic
leukemias, myelodysplastic leukemias, T-cell acute lymphoblastic
leukemias, and chronic myelogenous leukemias (CMLs).
[0223] Compounds presented herein are useful in the treatment of a variety
of biologically aberrant conditions or disorders related to tyrosine
kinase signal transduction. Such disorders pertain to abnormal cell
proliferation, differentiation, and/or metabolism. Abnormal cell
proliferation may result in a wide array of diseases, including the
development of neoplasia such as carcinoma, sarcoma, leukemia,
glioblastoma, hemangioma, psoriasis, arteriosclerosis, arthritis and
diabetic retinopathy (or other disorders related to uncontrolled
angiogenesis and/or vasculogenesis).
[0224] In various embodiments, compounds presented herein regulate,
modulate, and/or inhibit disorders associated with abnormal cell
proliferation by affecting the enzymatic activity of one or more tyrosine
kinases and interfering with the signal transduced by said kinase. More
particularly, the present invention is directed to compounds which
regulate, modulate said kinase mediated signal transduction pathways as a
therapeutic approach to cure leukemia and many kinds of solid tumors,
including but not limited to carcinoma, sarcoma, erythroblastoma,
glioblastoma, meningioma, astrocytoma, melanoma and myoblastoma.
Indications may include, but are not limited to brain cancers, bladder
cancers, ovarian cancers, gastric cancers, pancreas cancers, colon
cancers, blood cancers, lung cancers and bone cancers.
[0225] In other embodiments, compounds herein are useful in the treatment
of cell proliferative disorders including cancers, blood vessel
proliferative disorders, fibrotic disorders, and mesangial cell
proliferative disorders. Blood vessel proliferation disorders refer to
angiogenic and vasculogenic disorders generally resulting in abnormal
proliferation of blood vessels. The formation and spreading of blood
vessels, or vasculogenesis and angiogenesis, respectively, play important
roles in a variety of physiological processes such as embryonic
development, corpus luteum formation, wound healing and organ
regeneration. They also play a pivotal role in cancer development. Other
examples of blood vessel proliferation disorders include arthritis, where
new capillary blood vessels invade the joint and destroy cartilage, and
ocular diseases, like diabetic retinopathy, where new capillaries in the
retina invade the vitreous, bleed and cause blindness. Conversely,
disorders related to the shrinkage, contraction or closing of blood
vessels, such as restenosis, are also implicated.
[0226] Fibrotic disorders refer to the abnormal formation of extracellular
matrix. Examples of fibrotic disorders include hepatic cirrhosis and
mesangial cell proliferative disorders. Hepatic cirrhosis is
characterized by the increase in extracellular matrix constituents
resulting in the formation of a hepatic scar. Hepatic cirrhosis can cause
diseases such as cirrhosis of the liver. An increased extracellular
matrix resulting in a hepatic scar can also be caused by viral infection
such as hepatitis. Lipocytes appear to play a major role in hepatic
cirrhosis. Other fibrotic disorders implicated include atherosclerosis
(see, below).
[0227] Mesangial cell proliferative disorders refer to disorders brought
about by abnormal proliferation of mesangial cells. Mesangial
proliferative disorders include various human renal diseases, such as
glomerulonephritis, diabetic nephropathy, malignant nephrosclerosis,
thrombotic microangiopathy syndromes, transplant rejection, and
glomerulopathies. The cell proliferative disorders which are indications
of the present invention are not necessarily independent. For example,
fibrotic disorders may be related to, or overlap, with blood vessel
proliferative disorders. For example, atherosclerosis results, in part,
in the abnormal formation of fibrous tissue within blood vessels.
[0228] Compounds of the invention can be administered to a subject upon
determination of the subject as having a disease or unwanted condition
that would benefit by treatment with said derivative. The determination
can be made by medical or clinical personnel as part of a diagnosis of a
disease or condition in a subject. Non-limiting examples include
determination of a risk of acute myelogenous leukemia (AML), B-precursor
cell acute lymphoblastic leukemias, myelodysplastic leukemias, T-cell
acute lymphoblastic leukemias, and chronic myelogenous leukemias (CMLs).
[0229] The methods of the invention can comprise the administration of an
effective amount of one or more compounds as disclosed herein, optionally
in combination with one or more other active agents for the treatment of
a disease or unwanted condition as disclosed herein. The subject is
preferably human, and repeated administration over time is within the
scope of the present invention.
[0230] The present invention thus also provides compounds described above
and their salts or solvates and pharmaceutically acceptable salts or
solvates thereof for use in the prevention or treatment of disorders
mediated by aberrant protein tyrosine kinase activity such as human
malignancies and the other disorders mentioned above. The compounds of
the present invention are especially useful for the treatment of
disorders caused by aberrant kinase activity such as breast, ovarian,
gastric, pancreatic, non-small cell lung, bladder, head and neck cancers,
and psoriasis. The cancers include hematologic cancers, for example,
acute myelogenous leukemia (AML), B-precursor cell acute lymphoblastic
leukemias, myelodysplastic leukemias, T-cell acute lymphoblastic
leukemias, and chronic myelogenous leukemias (CMLs).
[0231] A further aspect of the invention provides a method of treatment of
a human or animal subject suffering from a disorder mediated by aberrant
protein tyrosine kinase activity, including susceptible malignancies,
which comprises administering to the subject an effective amount of a
compound described above or a pharmaceutically acceptable salt or solvate
thereof.
[0232] A further aspect of the present invention provides the use of a
compound described above, or a pharmaceutically acceptable salt or
solvate thereof, in the preparation of a medicament for the treatment of
cancer and malignant tumors. The cancer can be stomach, gastric, bone,
ovary, colon, lung, brain, larynx, lymphatic system, genitourinary tract,
ovarian, squamous cell carcinoma, astrocytoma, Kaposi's sarcoma,
glioblastoma, lung cancer, bladder cancer, head and neck cancer,
melanoma, ovarian cancer, prostate cancer, breast cancer, small-cell lung
cancer, leukemia, acute myelogenous leukemia (AML), B-precursor cell
acute lymphoblastic leukemias, myelodysplastic leukemias, T-cell acute
lymphoblastic leukemias, and chronic myelogenous leukemias (CMLs),
glioma, colorectal cancer, genitourinary cancer gastrointestinal cancer,
or pancreatic cancer.
[0233] In accordance with the present invention, compounds provided herein
are useful for preventing and treating conditions associated with
ischemic cell death, such as myocardial infarction, stroke, glaucoma, and
other neurodegenerative conditions. Various neurodegenerative conditions
which may involve apoptotic cell death, include, but are not limited to,
Alzheimer's Disease, ALS and motor neuron degeneration, Parkinson's
disease, peripheral neuropathies, Down's Syndrome, age related macular
degeneration (ARMD), traumatic brain injury, spinal cord injury,
Huntington's Disease, spinal muscular atrophy, and HIV encephalitis. The
compounds described in detail above can be used in methods and
compositions for imparting neuroprotection and for treating
neurodegenerative diseases.
[0234] The compounds described herein, can be used in a pharmaceutical
composition for the prevention and/or the treatment of a condition
selected from the group consisting of arthritis (including
osteoarthritis, degenerative joint disease, spondyloarthropathies, gouty
arthritis, systemic lupus erythematosus, juvenile arthritis and
rheumatoid arthritis), common cold, dysmenorrhea, menstrual cramps,
inflammatory bowel disease, Crohn's disease, emphysema, acute respiratory
distress syndrome, asthma, bronchitis, chronic obstructive pulmonary
disease, Alzheimer's disease, organ transplant toxicity, cachexia,
allergic reactions, allergic contact hypersensitivity, cancer (such as
solid tumor cancer including colon cancer, breast cancer, lung cancer and
prostrate cancer; hematopoietic malignancies including leukemias and
lymphomas; Hodgkin's disease; aplastic anemia, skin cancer and familiar
adenomatous polyposis), tissue ulceration, peptic ulcers, gastritis,
regional enteritis, ulcerative colitis, diverticulitis, recurrent
gastrointestinal lesion, gastrointestinal bleeding, coagulation, anemia,
synovitis, gout, ankylosing spondylitis, restenosis, periodontal disease,
epidermolysis bullosa, osteoporosis, atherosclerosis (including
atherosclerotic plaque rupture), aortic aneurysm (including abdominal
aortic aneurysm and brain aortic aneurysm), periarteritis nodosa,
congestive heart failure, myocardial infarction, stroke, cerebral
ischemia, head trauma, spinal cord injury, neuralgia, neurodegenerative
disorders (acute and chronic), autoimmune disorders, Huntington's
disease, Parkinson's disease, migraine, depression, peripheral
neuropathy, pain (including low back and neck pain, headache and
toothache), gingivitis, cerebral amyloid angiopathy, nootropic or
cognition enhancement, amyotrophic lateral sclerosis, multiple sclerosis,
ocular angiogenesis, corneal injury, macular degeneration,
conjunctivitis, abnormal wound healing, muscle or joint sprains or
strains, tendonitis, skin disorders (such as psoriasis, eczema,
scleroderma and dermatitis), myasthenia gravis, polymyositis, myositis,
bursitis, burns, diabetes (including types I and II diabetes, diabetic
retinopathy, neuropathy and nephropathy), tumor invasion, tumor growth,
tumor metastasis, corneal scarring, scleritis, immunodeficiency diseases
(such as AIDS in humans and FLV, FIV in cats), sepsis, premature labor,
hypoprothrombinemia, hemophilia, thyroiditis, sarcoidosis, Behcet's
syndrome, hypersensitivity, kidney disease, Rickettsial infections (such
as Lyme disease, Erlichiosis), Protozoan diseases (such as malaria,
giardia, coccidia), reproductive disorders, and septic shock, arthritis,
fever, common cold, pain and cancer in a mammal, preferably a human, cat,
livestock or a dog, comprising an amount of a compound described herein
or a pharmaceutically acceptable salt thereof effective in such
prevention and/or treatment optionally with a pharmaceutically acceptable
carrier.
[0235] A further aspect of the present invention provides the use of a
compound described above, or a pharmaceutically acceptable salt thereof,
in the preparation of a medicament for the treatment of psoriasis.
[0236] As one of skill in the art will recognize, the compounds can be
administered before, during or after the occurrence of a condition or a
disease, and the timing of administering the composition containing a
compound can vary. Thus, for example, the compounds can be used as a
prophylactic and can be administered continuously to subjects with a
propensity to conditions and diseases in order to prevent the occurrence
of the disorder. The compounds and compositions can be administered to a
subject during or as soon as possible after the onset of the symptoms.
The administration of the compounds can be initiated within the first 48
hours of the onset of the symptoms, preferably within the first 48 hours
of the onset of the symptoms, more preferably within the first 6 hours of
the onset of the symptoms, and most preferably within 3 hours of the
onset of the symptoms. The initial administration can be via any route
practical, such as, for example, an intravenous injection, a bolus
injection, infusion over 5 min. to about 5 hours, a pill, a capsule,
transdermal patch, buccal delivery, and the like, or a combination
thereof. A compound is preferably administered as soon as is practicable
after the onset of a condition or a disease is detected or suspected, and
for a length of time necessary for the treatment of the disease, such as,
for example, from about 1 month to about 3 months. As one of skill in the
art will recognize, the length of treatment can vary for each subject,
and the length can be determined using the known criteria. For example,
the compound or a formulation containing the compound can be administered
for at least 2 weeks, preferably about 1 month to about 5 years, and more
preferably from about 1 month to about 3 years.
[0237] Kits/Articles of Manufacture
[0238] For use in the therapeutic applications described herein, kits and
articles of manufacture are also within the scope of the invention. Such
kits can comprise a carrier, package, or container that is
compartmentalized to receive one or more containers such as vials, tubes,
and the like, each of the container(s) comprising one of the separate
elements to be used in a method of the invention. Suitable containers
include, for example, bottles, vials, syringes, and test tubes. The
containers can be formed from a variety of materials such as glass or
plastic.
[0239] For example, the container(s) can comprise one or more compounds of
the invention, optionally in a composition or in combination with another
agent as disclosed herein. The container(s) optionally have a sterile
access port (for example the container can be an intravenous solution bag
or a vial having a stopper pierceable by a hypodermic injection needle).
Such kits optionally comprising a compound with an identifying
description or label or instructions relating to its use in the methods
of the present invention.
[0240] A kit of the invention will typically may comprise one or more
additional containers, each with one or more of various materials (such
as reagents, optionally in concentrated form, and/or devices) desirable
from a commercial and user standpoint for use of a compound of the
invention. Non-limiting examples of such materials include, but not
limited to, buffers, diluents, filters, needles, syringes; carrier,
package, container, vial and/or tube labels listing contents and/or
instructions for use, and package inserts with instructions for use. A
set of instructions will also typically be included.
[0241] A label can be on or associated with the container. A label can be
on a container when letters, numbers or other characters forming the
label are attached, molded or etched into the container itself; a label
can be associated with a container when it is present within a receptacle
or carrier that also holds the container, e.g., as a package insert. A
label can be used to indicate that the contents are to be used for a
specific therapeutic application. The label can also indicate directions
for use of the contents, such as in the methods described herein.
[0242] The terms "kit" and "article of manufacture" may be used as
synonyms.
EXAMPLES
[0243] The present invention is further illustrated by the following
examples, which should not be construed as limiting in any way. The
experimental procedures to generate the data shown are discussed in more
detail below. For all formulations herein, multiple doses may be
proportionally compounded as is known in the art.
[0244] The invention has been described in an illustrative manner, and it
is to be understood that the terminology used is intended to be in the
nature of description rather than of limitation. Thus, it will be
appreciated by those of skill in the art that conditions such as choice
of solvent, temperature of reaction, volumes, reaction time may vary
while still producing the desired compounds. In addition, one of skill in
the art will also appreciate that many of the reagents provided in the
following examples may be substituted with other suitable reagents. See,
e.g., Smith & March, Advanced Organic Chemistry, 5.sup.th ed. (2001).
Example A
Synthesis of Isoxazole-Amides
[0245] Compounds A1 through A240 are synthesized by methods known in the
art or described herein. The structures are shown below in Table A:
2TABLE A
NO. STRUCTURE
A1
39
A2 40
A3 41
A4 42
A5 43
A6 44
A7 45
A8 46
A9 47
A10 48
A11
49
A12 50
A13 51
A14 52
A15 53
A16 54
A17 55
A18 56
A19 57
A20 58
A21 59
A22 60
A23 61
A24 62
A25 63
A26 64
A27
65
A28 66
A29 67
A30 68
A31 69
A32 70
A33 71
A34 72
A35 73
A36 74
A37 75
A38 76
A39 77
A40 78
A41 79
A42 80
A43
81
A44 82
A45 83
A46 84
A47 85
A48 86
A49 87
A50 88
A51 89
A52 90
A53 91
A54 92
A55 93
A56 94
A57 95
A58 96
A59
97
A60 98
A61 99
A62 100
A63 101
A64 102
A65 103
A66 104
A67 105
A68 106
A69 107
A70 108
A71 109
A72 110
A73 111
A74 112
A75 113
A76 114
A77 115
A78 116
A79 117
A80 118
A81 119
A82 120
A83 121
A84 122
A85 123
A86 124
A87 125
A88 126
A89 127
A90 128
A91 129
A92 130
A93 131
A94 132
A95 133
A96 134
A97 135
A98 136
A99 137
A100 138
A101 139
A102 140
A103 141
A104 142
A105 143
A106 144
A107 145
A108 146
A109 147
A110 148
A111 149
A112 150
A113 151
A114 152
A115 153
A116 154
A117 155
A118 156
A119 157
A120 158
A121 159
A122 160
A123 161
A124 162
A125 163
A126 164
A127 165
A128 166
A129 167
A130 168
A131 169
A132 170
A133 171
A134 172
A135 173
A136 174
A137 175
A138 176
A139 177
A140 178
A141 179
A142 180
A143 181
A144 182
A145 183
A146
184
A147 185
A148 186
A149 187
A150 188
A151 189
A152 190
A153 191
A154 192
A155 193
A156 194
A157 195
A158 196
A159 197
A160 198
A161 199
A162 200
A163 201
A164 202
A165 203
A166 204
A167 205
A168 206
A169 207
A170 208
A171 209
A172 210
A173 211
A174 212
A175 213
A176 214
A177 215
A178 216
A179 217
A180 218
A181 219
A182 220
A183 221
A184 222
A185 223
A186 224
A187 225
A188 226
A189 227
A190 228
A191 229
A192 230
A193
231
A194 232
A195 233
A196 234
A197 235
A198 236
A199 237
A200 238
A201 239
202 240
A203 241
A204 242
A205 243
A206 244
A207 245
A208 246
A209 247
A210 248
A211 249
A212 250
A213 251
A214 252
A215 253
A216 254
A217 255
A218 256
A219 257
A220 258
A221 259
A222 260
A223 261
A224 262
A225 263
A226 264
A227 265
A228 266
A229 267
A230 268
A231 269
A232 270
A233 271
A234 272
A235 273
A236 274
A237 275
A238 276
A239 277
A240 278
Example B
Exemplary Synthesis of Isoxazole-Amides
[0246] 279
[0247] In a 40 mL vial, 1 mL of thionyl chloride was added to 0.2 mmol
para-substituted phenylacetic acid. The vial was capped and stirred at
80.degree. C. for approximately three hours. The completion of the
reaction was checked by TLC. The excess thionyl chloride was removed in
vacuo. The residue was dissolved in dichloromethane and added to a
mixture of 3-tert-butyl-isoxazol-5-ylamine (0.2 mmol) and DIEA (0.2
mmol). The reaction was stirred overnight at 45.degree. C. The solvent
was removed under vacuum and the product was purified by HPLC.
Synthesis of Compound B1: N-(3-tert-butylisoxazol-5-yl)-2-(4-(benzyloxy)ph-
enyl)acetamide
[0248] 280
[0249] (4-Benzyloxy-phenyl)-acetic acid (50 mg, 0.2 mmol, 1 eq) was
stirred with 1 mL of thionyl chloride at 80.degree. C. for approximately
three hours. The completion of the reaction was checked by TLC. Excess
thionyl chloride was removed in vacuo, the residue was dissolved in
dichloromethane and added to a mixture of 3-tert-butyl-isoxazol-5-ylamine
(28 mg, 0.2 mmol, 1 eq) and DIEA (35 .mu.L, 0.2 mmol, 1 eq). The reaction
was stirred overnight at 45.degree. C. The solvent was removed and the
product purified by HPLC. Yield: 42 mg (57%), LC/MS [MH.sup.+]365.
[0250] Compounds B2 through B16 were synthesized in a manner analogous to
Compound B1 using similar starting materials and reagents. The structures
are shown below in Table B:
3TABLE B
NO. CHEMICAL STRUCTURE
B1 281
B2 282
B3 283
B4 284
B5 285
B6 286
B7
287
B8 288
B9 289
B10 290
B11 291
B12 292
B13 293
B14 294
B15 295
B16 296
Example C
Synthesis of Thiazole-amides
Synthesis of Compound C1: 2-(4-(benzyloxy)phenyl)-N-(5-methylthiazol-2-yl)-
acetamide
[0251] 297
[0252] Compound C1 was prepared in strict analogy to compound B1 using
2-amino-5-methylthiazole as starting material instead of
3-tert-butyl-isoxazol-5-ylamine.
[0253] Compounds C2 through C6 were synthesized in a manner analogous to
Compound C1 using similar starting materials and reagents. The structures
are shown below in Table C:
4TABLE C
NO. CHEMICAL STRUCTURE
C1 298
C2 299
C3 300
C4 301
C5 302
C6 303
Example E
Synthesis of Di-Phenyl Ureas
Synthesis of Compound E1: 2-(4-Fluoro-phenyl)-N-(5-methyl-2-phenyl-2H-pyra-
zol-3-yl)-acetamide
[0254] 304
[0255] Compound E1 was prepared in strict analogy to compound B1 using
5-methyl-2-phenyl-2H-pyrazol-3-ylamine and 4-fluorophenylacetic acid as
starting materials.
[0256] Compounds E2 through E20 were synthesized in a manner analogous to
Compound E1 using similar starting materials and reagents. The structures
are shown below in Table E:
5TABLE E
NO. CHEMICAL STRUCTURE
E1 305
E2 306
E3 307
E4 308
E5 309
E6 310
E7
311
E8 312
E9 313
E10 314
E11 315
E12 316
E13 317
E14 318
E15 319
E16 320
E17 321
E18 322
E19 323
E20 324
Example F
Synthesis of Isoxazole-Bis-Amides
[0257] 325
[0258] In a vial thionyl chloride was added to a para-substituted
phenylacetic acid. The vial was capped and stirred at 80.degree. C. for
approximately three hours. The completion of the reaction was checked by
TLC, and the excess thionyl chloride removed in vacuo. The residue was
dissolved in dichloromethane and added to a mixture
5-tert-butyl-isoxazol-3-ylamine and DIEA. The reaction was stirred
overnight at 45.degree. C. The solvent was removed under vacuum and the
product was purified by HPLC. 326
[0259] For the case of R.dbd.NO.sub.2, reduction to the amine was carried
out prior to reaction with an activated carboxylic acid. 1.5 gm of
1-(5-tert-butyl-isoxazol-3-yl)-3-(4-nitro-phenyl)-amide was dissolved in
50 ml THF and 0.1 g of 10% Pd/C is added. The solution was stirred under
hydrogen at 50 psi. for 24 hours then filtered through a Celite pad. The
organic solvent was evaporated under vacuum and the resulting residue was
triturated with ethyl acetate. 327
[0260] 1 equivalent of the carboxylic acid and 1.1 equivalent of CDI were
dissolved in dry DMF and stirred at 40.degree. C. for 2 h, then 1
equivalent of the substituted aniline was added. The reaction mixture was
stirred at 40.degree. C. overnight and the final product was purified by
preparative HPLC. 328
[0261] Alternatively, 1 equivalent of the carboxylic acid and 1.1
equivalent of thionyl chloride were heated in a sealed tube at 50 C. for
3 h. The excess thionyl chloride was evaporated, 1 equivalent of aniline
in DMF was added, and the solution stirred at room temperature for 8 h.
The final product was purified by preparative HPLC.
[0262] Compounds F1 through F5 are synthesized in a manner analogous to
those shown above using similar starting materials and reagents. The
structures are shown below in Table F:
6TABLE F
NO. CHEMICAL STRUCTURE
F1 329
F2 330
F3 331
F4 332
F5 333
Binding Constant (K.sub.d) Measurements for Small-Molecule-Kinase
Interactions
[0263] Methods for measuring binding affinities for interactions between
small molecules and kinases including FLT3, c-KIT, ABL(T334I) [a.k.a.
ABL(T315I)], VEGFR2 (a.k.a. KDR), and EGFR are described in detail in
U.S. application Ser. No. 10/873,835, which is incorporated by reference
herein in its entirety. The components of the assays include human
kinases expressed as fusions to T7 bacteriophage particles and
immobilized ligands that bind to the ATP site of the kinases. For the
assay, phage-displayed kinases and immobilized ATP site ligands are
combined with the compound to be tested. If the test compound binds the
kinase it competes with the immobilized ligand and prevents binding to
the solid support. If the compound does not bind the kinase,
phage-displayed proteins are free to bind to the solid support through
the interaction between the kinase and the immobilized ligand. The
results are read out by quantitating the amount of fusion protein bound
to the solid support, which is accomplished by either traditional phage
plaque assays or by quantitative PCR (qPCR) using the phage genome as a
template. To determine the affinity of the interactions between a test
molecule and a kinase, the amount of phage-displayed kinase bound to the
solid support is quantitated as a function of test compound
concentration. The concentration of test molecule that reduces the number
of phage bound to the solid support by 50% is equal to the K.sub.d for
the interaction between the kinase and the test molecule. Typically, data
are collected for twelve concentrations of test compound and, the
resultant binding curve is fit to a non-cooperative binding isotherm to
calculate K.sub.d.
[0264] Described in the exemplary assays below is data from binding with
varying kinases. Binding values are reported as follows "+" for
representative compounds exhibiting a binding dissociation constant (Kd)
of 10,000 nM or higher; "++" for representative compounds exhibiting a Kd
of 1,000 nM to 10,000 nM; "+++" for representative compounds exhibiting a
Kd of 100 nM to 1,000 nM; and "++++" for representative compounds
exhibiting a Kd of less than 100 nM. The term "ND" represents
non-determined values.
7
Binding Constand (K.sub.d) Measurements for
Small-Molecule c-Kit Interactions
Binding
Compound
Assay-KIT
Structure (DKIN)
334 +++
335 +++
336 ++
337 ++
338 ++
339 +++
Binding
Compound Assay-KIT
Structure (JMminus)
340
++++
341 ++++
342 ++++
343 ++++
344 +++
345 ++++
[0265] All references cited herein, including patents, patent
applications, and publications, are herby incorporated by reference in
their entireties, whether previously specifically incorporated or not.
[0266] Having now fully described this invention, it will be appreciated
by those skilled in the art that the same can be performed within a wide
range of equivalent parameters, concentrations, and conditions without
departing from the spirit and scope of the invention and without undue
experimentation.
[0267] While this invention has been described in connection with specific
embodiments thereof, it will be understood that it is capable of further
modifications. This application is intended to cover any variations,
uses, or adaptations of the invention following, in general, the
principles of the invention and including such departures from the
present disclosure as come within known or customary practice within the
art to which the invention pertains and as may be applied to the
essential features hereinbefore set forth.
* * * * *