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| United States Patent Application |
20110243974
|
| Kind Code
|
A1
|
|
ITOH; Kyogo
;   et al.
|
October 6, 2011
|
NOVEL TUMOR ANTIGEN PROTEIN SART-3 AND TUMOR ANTIGEN PEPTIDES THEREOF
Abstract
A novel tumor antigen protein and gene therefor, tumor antigen peptides
derived from said tumor antigen protein or derivatives thereof as well as
medicaments, prophylactics, or diagnostics for tumors using such tumor
substances in vitro or in vitro are provided.
| Inventors: |
ITOH; Kyogo; (Miyaki-gun, JP)
; NAKAO; Masanobu; (Okawa-Shi, JP)
|
| Assignee: |
GREEN PEPTIDE CO., LTD.
Kurume-shi
JP
|
| Serial No.:
|
109976 |
| Series Code:
|
13
|
| Filed:
|
May 17, 2011 |
| Current U.S. Class: |
424/185.1; 530/328 |
| Class at Publication: |
424/185.1; 530/328 |
| International Class: |
A61K 39/00 20060101 A61K039/00; C07K 7/06 20060101 C07K007/06; A61P 35/00 20060101 A61P035/00 |
Foreign Application Data
| Date | Code | Application Number |
| Aug 28, 1998 | JP | 242660/1998 |
Claims
1. An isolated peptide consisting of amino acid sequence of SEQ ID NO:
28.
2. The isolated peptide according to claim 1, wherein the peptide is a
recombinant polypeptide produced by expressing a recombinant DNA
comprising a polynucleotide that encodes the amino acid sequence of SEQ
ID NO: 28.
3. A pharmaceutical composition that comprises as an active ingredient
the peptide according to claim 1.
4. The pharmaceutical composition according to claim 3, wherein the tumor
antigen peptide is a recombinant polypeptide produced by expressing a
recombinant DNA comprising a polynucleotide that encodes amino acid
sequence of SEQ ID NO: 28.
5. A diagnostic agent that comprises the peptide according to claim 1.
6. The diagnostic agent according to claim 5, wherein the tumor antigen
peptide is a recombinant polypeptide produced by expressing a recombinant
DNA comprising a polynucleotide that encodes amino acid sequence of SEQ
ID NO: 28.
Description
RELATED APPLICATIONS
[0001] This application claims priority under 35 USC .sctn.120 as a
Divisional of co-pending application Ser. No. 12/432,700, filed Apr. 29,
2009, which is a Divisional of application Ser. No. 10/781,659, filed on
Feb. 20, 2004 and issued Jun. 2, 2009 as U.S. Pat. No. 7,541,428, which
is a Divisional of application Ser. No. 09/763,985, filed on Feb. 28,
2001 and now abandoned, which in turn is the National Stage of
International Application No. PCT/JP1999/04622 filed on Aug. 27, 1999.
This application also claims priority of Application No. 242660/1998
filed in Japan on Aug. 28, 1998, under 35 U.S.C. .sctn.119. The entire
contents of each of the above applications is hereby incorporated by
reference.
TECHNICAL FIELD
[0002] The present invention relates to the novel tumor antigen protein,
and tumor antigen peptides thereof. More particularly, it relates to the
novel tumor antigen protein and the gene thereof, tumor antigen peptides
derived from the tumor antigen protein, and derivatives of their
substances, as well as to medicaments, prophylactics, or diagnostics for
tumors that utilize in vivo or in vitro such tumor antigen protein,
genes, tumor antigen peptides, or derivatives thereof.
BACKGROUND ART
[0003] It is known that immune system, particularly T cells, plays an
important role in tumor elimination by a living body. Indeed,
infiltration of lymphocytes exhibiting cytotoxic effects on tumor cells
in human tumor foci has been observed (Arch. Surg., 126:200, 1990), and
cytotoxic T lymphocytes (CTLs) recognizing autologous tumor cells have
been isolated from melanomas without great difficulties (e.g., Immunol.
Today, 8:385, 1987; J Immunol., 138:989, 1987; and Int. J. Cancer, 52:52,
1992). In addition, the results of clinical treatment of melanomas by
transfer of the CTLs recognizing autologous tumor cells also suggest the
importance of T cells in tumor elimination (J. Natl. Cancer. Inst.,
86:1159, 1994).
[0004] Although it had long been unknown about target molecules for CTLs
attacking autologous tumor cells, the recent advance in immunology and
molecular biology gradually began elucidating such target molecules.
Specifically, it has been found that CTL, using the T cell receptors
(TCRs), recognizes a complex between a peptide, called tumor antigen
peptide, and a major histocompatibility complex class I antigen (MHC
class I antigen, and in the case of human, referred to as HLA antigen),
and thereby attacks autologous tumor cells.
[0005] Tumor antigen peptides are generated by degradation of tumor
antigen proteins, which are proteins specific for tumors, in cells with
proteasomes, which proteins are intracellularly synthesized. The tumor
antigen peptides thus generated bind to MHC class I antigens (HLA
antigens) in endoplasmic reticulum to form complexes, and the complexes
are transported to the cell surface to be presented as an antigen. A
tumor-specific CTL recognizes the complex presented as an antigen, and
exhibits anti-tumor effects through its cytotoxic action or production of
lymphokines. As a consequence of elucidation of a series of the actions,
it has become possible to treat tumors by using tumor antigen proteins or
tumor antigen peptides as so-called cancer vaccines to enhance
tumor-specific CTLs in the body of a tumor patient.
[0006] As a tumor antigen protein, T. Boon et al. identified a protein
named MAGE from human melanoma cells for the first time in 1991 (Science,
254:1643, 1991). Subsequently, several additional tumor antigen proteins
have been identified mainly from melanoma cells. Examples of melanoma
antigens that have been identified are melanosomal proteins such as a
melanocytic tissue-specific protein, gp100 (J. Exp. Med., 179:1005,
1994), MART-1 (Proc. Natl. Acad. Sci. USA, 91:3515, 1994), and tyrosinase
(J. Exp. Med., 178:489, 1993); MEGE-related proteins that are expressed
not only on melanomas but also on various cancer cells and normal
testicular cells (J. Exp. Med., 179:921, 1994); .beta.-catenin having a
tumor-specific amino acid mutation (J. Exp. Med., 183:1185, 1996); and
CDK4 (Science, 269:1281, 1995). Tumor antigen proteins other than those
from melanomas have also been identified, including products of oncogenes
such as HER2-neu (J. Exp. Med, 181:2109, 1995) and p53 (variant) (Proc.
Natl. Acad. Sci, USA, 93:14704, 1996); tumor markers such as CEA (J.
Natl. Cancer Inst., 87:982, 1995) and PSA (J. Natl. Cancer Inst., 89:293,
1997); and viral proteins such as HPV (J. Immunol., 154:5934, 1995) and
EBV (Int. Immunol., 7:653, 1995). Detailed descriptions of these
substances can be found in published reviews (e.g. Immunol. Today,
18:267, 1997; J. Exp. Med., 183:725, 1996; and Curr. Opin. Immunol.,
8:628, 1996).
[0007] In applications of a tumor antigen protein or a tumor antigen
peptide to treatment or diagnosis of tumors, it is important to identify
a tumor antigen that can be widely applied to squamous cell carcinomas
such as esophageal and lung cancers that occur at a much higher incidence
compared to melanomas. In this relation, the present inventors conducted
cloning of a gene encoding a novel tumor antigen protein from squamous
cell carcinoma cells derived from esophageal cancer, and identified for
the first time from the tumor cell other than melanomas several tumor
antigen peptides that are bound to and presented on HLA antigens of which
HLA types are HLA-A24 or HLA-A26 (J. Exp. Med, 187:277, 1998;
International Patent Publication WO 97/46676).
[0008] When these tumor antigen peptides are clinically applied in
practice, it may be desirable to use two or more different tumor antigen
peptides rather than to use merely one peptide. That is to say, taking
into consideration the facts that all cancer cells do not express an
identical tumor antigen in common and that two or more different tumor
antigen peptides are presented on a single cancer cell, a treatment using
two or more different tumor antigen peptides is believed to be more
effective. Indeed, in the case of melanoma, development of cocktail
formulations comprising two or more peptides has been attempted, since a
single peptide derived from a tumor antigen failed to exhibit adequate
effects (Int. J. Cancer, 66:162, 1996; and Int. J. Cancer, 67:54, 1996).
Under such circumstances, it is being required to identify novel tumor
antigen proteins and tumor antigen peptides that can be widely applied to
squamous cell carcinomas that occur at a higher incidence.
DISCLOSURE OF THE INVENTION
[0009] The present invention aims to provide the novel tumor antigen
protein and tumor antigen peptides. Particularly, it aims to provide the
novel tumor antigen protein and gene thereof, tumor antigen peptides
derived from the tumor antigen protein, and derivatives of their
substances, as well as to medicaments, prophylactics, or diagnostics for
tumors that utilize in vivo or in vitro such tumor antigen protein,
genes, tumor antigen peptides, or derivatives thereof. The tumor antigen
peptides of the present invention include a tumor antigen peptide that is
bound to and presented on HLA-A24 that is the HLA antigen carried by
about 60% of the Japanese people and a tumor antigen peptide that is
bound to and presented on HLA-A2 carried by about 40% of the Japanese and
the Caucasians, and, therefore, it can be applied to many patients.
Further, the tumor antigen peptides of the present invention may be also
applied to squamous cell carcinomas or the like that is recognized most
frequently as an etiologic cancer in human, and are expected to have
utilities as novel anti-tumor medicaments. It is known that the squamous
cell carcinoma on esophageal or lung cancer among the squamous cell
carcinomas tends to relatively exhibit a resistance to the current
chemotherapy and radiotherapy. In this respect, the development of the
tumor antigen peptides of the present invention is desired.
[0010] In order to obtain novel tumor antigen protein and tumor antigen
peptides, the present inventors made the following attempts.
[0011] First of all, the present inventors prepared a cDNA library from
esophageal cancer cell line KE-4 (FERM BP-5955), and doubly transfected
fibroblast cell line VA-13 (RIKEN CELL BANK, The Institute of Physical
and Chemical Research) with a recombinant plasmid of the library and a
recombinant plasmid containing cDNA of HLA-A2402 (one type of HLA-A24).
The resulting transfectants were treated with KE-4CTL (FERM BP-5954) that
is directed to KE-4, and the amount of produced IFN-.gamma. was measured
to determine whether or not KE-4CTL was activated. As a result of such
extensive screening repeatedly conducted, the present inventors finally
succeeded in cloning one gene encoding a tumor antigen protein although
we did not assure that the screening resulted in a novel and useful tumor
antigen protein. The inventors named the tumor antigen protein encoded by
the gene "SART-3". Comparing the base sequence of SART-3 with known
sequences revealed that said base sequence of SART-3 was a novel base
sequence that is different from the KIAA0156 gene registered as Accession
No. D63879 at GenBank database in terms of a single base, which function
has not been demonstrated.
[0012] Further, the present inventors identified tumor antigen peptide
portions residing in the amino acid sequence of SART-3 that are bound to
and presented on HLA-A24 and HLA-A2, and demonstrated that such peptides
have activity as a tumor antigen peptide.
[0013] The present invention has been completed on the basis of the
findings as described above.
[0014] Thus, the present invention relates to:
[0015] (1) A DNA encoding a protein consisting of an amino acid sequence
shown in SEQ ID NO: 2, or a protein variant consisting of an amino acid
sequence containing substitution, deletion, and/or addition of one or
more amino acid residues of SEQ ID NO: 2, provided that the protein and
the protein variant give rise to tumor antigen peptides that are capable
of binding to an HLA antigen and being recognized by cytotoxic T
lymphocytes;
[0016] (2) A DNA consisting of a base sequence shown in SEQ ID NO: 1, or a
DNA variant that hybridizes to the DNA under a stringent condition,
provided that a protein produced and expressed by the DNA or the DNA
variant gives rise to tumor antigen peptides that are capable of binding
to an HLA antigen and being recognized by cytotoxic T lymphocytes;
[0017] (3) An expression plasmid that contains the DNA of the above (1) or
(2);
[0018] (4) A transformant that is transformed with the expression plasmid
of the above (3);
[0019] (5) A process for producing a recombinant protein, which comprises
culturing the transformant of the above (4), and recovering the expressed
recombinant protein;
[0020] (6) A tumor antigen protein that is encoded by the DNA of the above
(1) or (2), or is produced by the process of the above (5);
[0021] (7) A pharmaceutical composition that comprises as an active
ingredient the DNA of the above (1) or (2), or the protein of the above
(6);
[0022] (8) A pharmaceutical composition for treating or preventing tumors,
which comprises as an active ingredient the DNA of the above (1) or (2),
or the protein of the above (6);
[0023] (9) A tumor antigen peptide that is a partial peptide derived from
the protein of the above (6), and that is capable of binding to an HLA
antigen and being recognized by cytotoxic T lymphocytes, or a derivative
thereof having the functionally equivalent properties;
[0024] (10) The tumor antigen peptide of the above (9) wherein the HLA
antigen is HLA-A24 or HLA-A2, or a derivative thereof having the
functionally equivalent properties;
[0025] (11) The tumor antigen peptide of the above (10), which comprises a
sequence selected from all or part of an amino acid sequence shown in any
one of SEQ ID NOs: 3-52, or a derivative thereof having the functionally
equivalent properties;
[0026] (12) The tumor antigen peptide of the above (11), which comprises a
sequence selected from all or part of an amino acid sequence shown in any
one of SEQ ID NOs: 3-9 and 25-29, or a derivative thereof having the
functionally equivalent properties;
[0027] (13) The tumor antigen peptide derivative of the above (11), which
comprises a sequence selected from all or part of an amino acid sequence
wherein the amino acid residue at position 2 and/or the C-terminus in the
amino acid sequence shown in any one of SEQ ID NOs: 3-52 is substituted
by another amino acid residue;
[0028] (14) The tumor antigen peptide derivative of the above (13), which
comprises a sequence selected from all or part of an amino acid sequence
wherein the amino acid residue at position 2 and/or the C-terminus in the
amino acid sequence shown in any one of SEQ ID NOs: 3-9 and 25-29 is
substituted by another amino acid residue;
[0029] (15) The tumor antigen peptide derivative of the above (13), which
comprises a sequence selected from all or part of an amino acid sequence
wherein the amino acid residue at position 2 in the amino acid sequence
shown in any one of SEQ ID NOs: 3-24 is substituted by tyrosine,
phenylalanine, methionine, or tryptophan, and/or the amino acid residue
at the C-terminus is substituted by phenylalanine, leucine, isoleucine,
tryptophan, or methionine;
[0030] (16) The tumor antigen peptide derivative of the above (13), which
comprises a sequence selected from all or part of an amino acid sequence
wherein the amino acid residue at position 2 in the amino acid sequence
shown in any one of SEQ ID NOs: 25-52 is substituted by leucine,
methionine, valine, isoleucine, or glutamine, and/or the amino acid
residue at the C-terminus is substituted by valine or leucine;
[0031] (17) The tumor antigen peptide derivative of the above (14), which
comprises a sequence selected from all or part of the amino acid sequence
shown in any one of SEQ ID NOs: 53-64;
[0032] (18) A pharmaceutical composition for treating or preventing
tumors, which comprises as an active ingredient at least one of
substances selected from the tumor antigen peptides and derivatives
thereof according to any one of the above (9) to (17);
[0033] (19) A recombinant DNA comprising at least one of DNAs that encode
the tumor antigen peptides or derivatives thereof according to any one of
the above (9) to (17);
[0034] (20) A recombinant polypeptide obtainable by expressing the
recombinant DNA of the above (19);
[0035] (21) A pharmaceutical composition for treating or preventing
tumors, which comprises as an active ingredient the recombinant DNA of
the above (19) or the recombinant polypeptide of the above (20);
[0036] (22) An antibody that specifically binds to any one of the tumor
antigen protein of the above (6), and the tumor antigen peptide or the
derivative thereof according to any one of the above (9) to (17);
[0037] (23) An antigen-presenting cell wherein a complex between an HLA
antigen and the tumor antigen peptide or the derivative thereof according
to any one of the above (9) to (17) is presented on the surface of a cell
having antigen-presenting ability, which cell is isolated from a tumor
patient;
[0038] (24) An antigen-presenting cell on which a complex between an HLA
antigen and a tumor antigen peptide or a derivative thereof is presented,
said antigen-presenting cell being obtainable by allowing a cell having
antigen-presenting ability isolated from a tumor patient to be
incorporated with the DNA of the above (1) or (2), the tumor antigen
protein of the above (6), the recombinant DNA of the above (19), or the
recombinant polypeptide of the above (20);
[0039] (25) A pharmaceutical composition for treating tumors, which
comprises as an active ingredient the antigen-presenting cell of the
above (23) or (24);
[0040] (26) A cytotoxic T lymphocyte that specifically recognizes a
complex between an HLA antigen and the tumor antigen peptide or
derivative thereof according to any one of the above (9) to (17);
[0041] (27) A cytotoxic T lymphocyte that specifically recognizes a
complex between an HLA antigen and a tumor antigen peptide or derivative
thereof, which complex is presented on the antigen-presenting cell of the
above (23) or (24);
[0042] (28) A pharmaceutical composition for treating tumors, which
comprises as an active ingredient the cytotoxic T lymphocyte of the above
(26) or (27);
[0043] (29) A diagnostic agent for tumors, which comprises the tumor
antigen peptide or derivative thereof according to any one of the above
(9) to (17), the protein of the above (6), or the recombinant polypeptide
of the above (20);
[0044] (30) Cytotoxic T lymphocyte OK-CTL, of which the deposit number is
FERM BP-6818; and
[0045] (31) A method for identifying tumor antigen proteins or tumor
antigen peptides, which comprises using OK-CTL of the above (30).
[0046] The DNAs of the present invention encode novel tumor antigen
proteins, and specific examples of the DNAs include a DNA encoding SART-3
protein consisting of an amino acid sequence shown in SEQ ID NO: 2, or a
protein variant consisting of an amino acid sequence containing
substitution, deletion, and/or addition of one or more amino acid
residues of the amino acid sequence of SART-3, provided that the protein
and the protein variant give rise to tumor antigen peptides that are
capable of binding to an HLA antigen and being recognized by cytotoxic T
lymphocytes; or a DNA of SART-3 consisting of a base sequence shown in
SEQ ID NO: 1, or a DNA variant that hybridizes to the DNA of SART-3 under
a stringent condition, provided that a protein produced and expressed by
the DNA and the DNA variant gives rise to tumor antigen peptides that are
capable of binding to an HLA antigen and being recognized by cytotoxic T
lymphocytes. The DNA of the present invention is further described
hereinafter following the order established above.
1) DNA Encoding SART-3
[0047] "DNA encoding a protein consisting of an amino acid sequence shown
in SEQ ID NO: 2" and "a DNA consisting of a base sequence shown in SEQ ID
NO: 1" among the DNAs described above refers to a DNA encoding tumor
antigen protein SART-3 of the present invention. The DNA may be cloned in
accordance with the process described in Examples hereinafter. Further,
the cloning of the DNA may be also conducted by, for example, screening a
cDNA library derived from cell lines such as esophageal cancer cell line
KE-4 (FERM BP-5955) using an appropriate portion of the base sequence
disclosed in GenBank Accession No. D63879 or shown in SEQ ID NO: 1 in the
present specification as a probe for hybridization or a PCR primer. It
would be ready for those skilled in the art to achieve such cloning in
accordance with Molecular Cloning 2nd Edt. Cold Spring Harbor Laboratory
Press (1989), for example.
2) DNA Encoding a Modified Protein of SART-3 or Allelic Variant Thereof
[0048] "DNA encoding a protein variant consisting of an amino acid
sequence containing substitution, deletion, and/or addition of one or
more amino acid residues of the amino acid sequence of SART-3" among the
DNAs described above refers to a DNA that encodes a so-called modified
protein, which is artificially prepared, or proteins such as an allelic
variant existing in a living body. The DNA encoding such protein variants
may be prepared by diverse methods such as site-directed mutagenesis and
PCR technique that are described in Molecular Cloning: A Laboratory
Manual 2nd Edt. vols. 1-3, Cold Spring Harbor Laboratory Press (1989),
Number of amino acid residue to be substituted, deleted and/or added
should be in a range that enables the substitution, deletion, and/or
addition in accordance with the well-known methods such as site-directed
mutagenesis as shown above.
3) DNA that Hybridizes to the DNA of SART-3 Under a Stringent Condition
[0049] "DNA variant that hybridizes to the DNA of SART-3 under a stringent
condition" among the DNAs described above refers to a DNA that hybridizes
to human SART-3 eDNA consisting of the base sequence shown in SEQ ID NO:
1 under a stringent condition, including SART-3 DNAs from all of
vertebrate such as rat and mouse, and DNAs encoding a partial protein of
SART-3.
[0050] The term "stringent condition" refers to a condition such that a
hybridization is conducted in a solution containing 6.times.SSC
(20.times.SSC represents 333 mM Sodium citrate, 333 mM NaCl), 0,5% SDS
and 50% formamide at 42.degree. C., and then the hybridized products are
washed in a solution of 0.1.times.SSC, 0.5% SDS at 68.degree. C., or to
conditions as described in Nakayama, et al., Bio-Jikken-Illustrated, vol.
2, "Idenshi-Kaiseki-No-Kiso (A Basis for Gene Analysis)", pp. 148-151,
Shujunsha, 1995.
[0051] The DNA variants are cloned by diverse processes such as
hybridization to the DNA shown in SEQ ID NO: 1. Particular procedures for
the processes such as production of cDNA library, hybridization,
selection of positive colony, and determination of base sequence are
well-known, and may be conducted consulting Molecular Cloning as shown
above. Probes useful for the hybridization includes a DNA comprising a
base sequence described in SEQ ID NO: 1.
[0052] Among the DNAs as described above 1) to 3), a DNA having an ability
to generate a tumor antigen peptide that is capable of binding to an HLA
antigen and being recognized by CTLs, and that is derived from a protein
produced by the expression of the DNA via intracellular degradation,
constitutes the DNA encoding tumor antigen protein of the present
invention, namely, the DNA of the present invention. Particularly, the
DNAs of the present invention are those that generate such peptide
fragment as a partial peptide consisting of a part of an amino acid
sequence of a protein produced by the expression of said DNA, said
peptide being capable of binding to an HLA antigen, and inducing
production of cytotoxic actions and cytokines from CTLs specific for the
complex between the peptide and the HLA antigen that bind to the complex
presenting on the cell surface.
[0053] Determination whether or not a candidate DNA may be a DNA encoding
a tumor antigen protein may be achieved for example by the following
method.
[0054] An expression plasmid containing a candidate DNA and an expression
plasmid containing a DNA encoding an HLA antigen are doubly transfected
into fibroblast VA-13 (RIKEN CELL BANK, The Institute of Physical and
Chemical Research) or COS-7 (ATCC CRL 1651) derived from African green
monkey kidney. The transfection may be achieved, for example, by the
Lipofectin method using Lipofectamine reagent (GIBCO BRL), Subsequently,
a tumor-responsive CTL that is restricted to the particular HLA antigen
used is added to act on the transfectants, and then the amount of various
cytokines (for example, IFN-.gamma.) produced by said CTL in response to
the transfectants may be measured, for example, by ELISA to determine
whether or not the candidate DNA is a DNA of the present invention. In
this context, since SART-3 contains HLA-A24- or HLA-A2-restricted tumor
antigen peptide portions, HLA-A24 cDNA (Cancer Res., 55:4248-4252 (1995);
Genbank Accession No. M64740) and HLA-A2 cDNA (Genbank Accession No.
M84379) may be used as the above DNA encoding the HLA antigen, whereas
those CTLs that are prepared from human peripheral blood lymphocytes as
well as HLA-A24-restricted CTLs such as KE-4CTL (FERM BP-5954) or
HLA-A2-restricted CTLs such as OK-CTL (FERM BP-6818) may be used as the
above CTL.
[0055] The DNA of the present invention as described above can be used as
an active ingredient in a medicament or a pharmaceutical composition. In
accordance with "pharmaceutical composition" that comprises the DNA of
the present invention as an active ingredient, administration of the DNA
of the present invention to a tumor patient makes treatment or prevention
of tumors possible.
[0056] By administering a DNA of the present invention incorporated into
an expression vector to a tumor patient according to the following
method, the tumor antigen protein is highly expressed in
antigen-presenting cells. Tumor antigen peptides that are subsequently
generated by intracellular degradation bind to HLA antigen to form
complexes, and the complexes are densely presented on the
antigen-presenting cell surface. As a result, CTLs specific for tumors
efficiently proliferate in the body, and destroy tumor cells. In this
way, treatment or prevention of tumors is achieved.
[0057] Administration and introduction of the DNA of the present invention
into cells may be achieved using viral vectors or according to any one of
other procedures (Nikkei-Science, April, 1994, pp. 20-45; Gekkan-Yakuji,
36(1), 23-48 (1994); Jikken-Igaku-Zokan, 12(15), 1994, and references
cited therein).
[0058] Examples of the methods using viral vectors include methods in
which DNA of the present invention is incorporated into DNA or RNA virus
such as retrovirus, adenovirus, adeno-associated virus, herpesvirus,
vaccinia virus, poxvirus, poliovirus, or Sindbis virus, and introduced
into cells. Among these methods, those using retrovirus, adenovirus,
adeno-associated virus, or vaccinia virus are particularly preferred.
[0059] Other methods include those in which expression plasmids are
directly injected intramuscularly (DNA vaccination), liposome method,
Lipofectin method, microinjection, calcium phosphate method, and
electroporation, and DNA vaccination and liposome method is particularly
preferred.
[0060] In order to allow a DNA of the present invention to act as a
medicament in practice, there are an in vivo method in which DNA is
directly introduced into the body, and an ex vivo method in which certain
cells are removed from human, and after introducing DNA into said cells
extracorporeally, the cells are reintroduced into the body
(Nikkei-Science, April, 1994, pp. 20-45; Gekkan-Yakuji, 36(1), 23-48
(1994); Jikkenn-Igaku-Zokan, 12(15), 1994; and references cited therein).
An in vivo method is more preferred.
[0061] In case of in vivo methods, the DNA may be administered by any
appropriate route depending on the disease and symptoms to be treated and
other factors. For example, it may be administered via intravenous,
intraarterial, subcutaneous, intracutaneous, intramuscular route, or the
like. In the case of in vivo methods, the compositions may be
administered in various dosage forms such as solution, and are typically
formulated, for example, in the form of injection containing DNA of the
present invention as an active ingredient, to which conventional carriers
may also be added, if necessary. If a DNA of the present invention is
included in liposomes or membrane-fused liposomes (such as Sendai virus
(HVJ)-liposomes), the compositions may be in the form of liposome
formulations such as suspension, frozen drug, centrifugally-concentrated
frozen drug, or the like.
[0062] Although the amount of a DNA of the present invention in such
formulations may vary depending on the disease to be treated, the age and
the weight of the patient, and the like, it is typical to administer
0.0001mg-100 mg, preferably 0.001mg-10 mg, of a DNA of the present
invention every several days to every several months.
[0063] In the invention, the term "protein" refers to a protein encoded by
the various DNAs of the present invention as described above, which has
an ability as tumor antigen protein to give rise to tumor antigen
peptides via intracellular degradation that are capable of binding to an
HLA antigen and being recognized by CTLs. Specific examples of the
proteins include SART-3 comprising an amino acid sequence shown in SEQ ID
NO: 2. The proteins of the present invention may be produced in large
scale using the DNA of the present invention as described above.
[0064] Production of tumor antigen proteins by expressing the DNA of the
present invention may be achieved in accordance with many publications
and references such as "Molecular
[0065] Cloning" mentioned above. Particularly, an expression plasmid that
replicates and functions in host cells is constructed by incorporating a
DNA of the present invention into an appropriate expression vector (e.g.,
pSV-SPORT1, pCR3). Subsequently, the expression plasmid is introduced
into appropriate host cells to obtain transformants. Examples of host
cells include those of prokaryotes such as Escherichia coli, unicellular
eukaryotes such as yeast, and cells derived from multicellular eukaryotes
such as insects or animals. Gene transfer into host cells may be achieved
by conventional methods such as calcium phosphate method, DEAE-dextran
method, electric pulse method, Lipofectin method, or the like. Desired
proteins are produced by culturing the transformants in appropriate
medium. The tumor antigen proteins thus obtained may be isolated and
purified according to standard biochemical procedures.
[0066] It can be demonstrated whether or not a tumor antigen protein of
the present invention has certain activity by, as described above,
expressing the DNA of the present invention within cells to produce the
protein of the present invention, and determining if the peptide fragment
generated by intracellular degradation of said protein has the activity
as a tumor antigen peptide. In case of using the tumor antigen protein as
it is, the measurement for the activity can be achieved by allowing the
protein to be incorporated into the phagocytes such as macrophage so as
to generate peptide fragments in cells, and then contacting CTLs to
complexes between the peptide fragments and HLA antigen, followed by
measuring the amount of various cytokines (for example, IFN-.gamma.)
produced by the CTLs in response to the complexes.
[0067] The protein of the present invention as described above can be also
used as an active ingredient in medicament or a pharmaceutical
composition. In accordance with "pharmaceutical composition" that
comprises the protein of the present invention as an active ingredient,
administration of the protein of the present invention makes treatment or
prevention of tumors possible, for example. When administered to a tumor
patient, the protein of the present invention is introduced into
antigen-presenting cells. Tumor antigen peptides that are subsequently
generated by intracellular degradation bind to HLA antigen to form
complexes, and the complexes are presented on the cell surface. CTLs
specific for the complex efficiently proliferate in the body, and destroy
tumor cells. In this way, treatment or prevention of tumors is achieved.
[0068] Pharmaceutical compositions comprising the tumor antigen protein of
the present invention may be administered together with an adjuvant in
order to effectively establish the cellular immunity, or may be
administered in a particulate dosage form. For such purpose, those
adjuvants described in the literature (Clin. Microbiol. Rev., 7:277-289,
1994) are applicable. In addition, liposomal preparations, particulate
preparations in which the ingredient is bound to beads having a diameter
of several .mu.M, or preparations in which the ingredient is attached to
lipids are also possible. Administration may be achieved, for example,
intradermally, hypodermically, or by intravenous injection. Although the
amount of a tumor antigen protein of the present invention in such
formulations may vary depending on the disease to be treated, the age and
the weight of the patient, and the like, it is typical to administer
0.0001 mg-1000 mg, preferably 0.001 mg-100 mg, more preferably 0.01 mg-10
mg of a tumor antigen protein of the present invention every several days
to every several months.
[0069] In the present invention, the term "tumor antigen peptide" refers
to a partial peptide that consists of a part of the tumor antigen protein
of the present invention and is capable of binding to an HLA antigen and
being recognized by CTL. Accordingly, any peptide falls within the scope
of the tumor antigen peptide of the present invention, regardless of its
length or its position in the amino acid sequence of the present protein,
as long as the peptide consists of a part of the amino acid sequence of
the present protein and a complex between said peptide and an HLA antigen
is capable of being recognized by CTL. Such tumor antigen peptides of the
present invention can be identified by synthesizing a candidate peptide
which consists of a part of the tumor antigen protein of the present
invention and conducting an assay for determining whether or not a
complex between the candidate peptide and an HLA antigen is recognized by
CTL, in other words, whether or not the candidate peptide has the
activity as a tumor antigen peptide.
[0070] In this connection, synthesis of peptides may be conducted
according to a method usually used in peptide chemistry. Examples of such
known methods are those described in the literatures including "Peptide
Synthesis", Interscience, New York, 1966; "The Proteins", vol. 2,
Academic Press Inc., New York, 1976; "Pepuchido-Gosei", Maruzen Co. Ltd.,
1975; "Pepuchido-Gosei-no-Kiso-to-Jikkenn", Maruzen Co. Ltd., 1985; and
"lyakuhin-no-Kaihatu, Zoku, vol. 14, Peputido-Gosei", Hirokawa S
hoten,
1991.
[0071] Next, methods for identifying tumor antigen peptides of the present
invention are further described below.
[0072] The respective sequence rules (motifs) of antigen peptides that are
bound to and presented on the following HLA types have been known;
HLA-A1, -A0201, -A0204, -A0205, -A0206, -A0207, -A11, -A24, -A31, -A6801,
-B7, -B8, -B2705, -B37, -Cw0401, and -Cw0602 (see, e.g., Immunogenetics,
41:178, 1995). Regarding the motif for HLA-A24, for example, it is known
that in the sequence of peptides consisting of 8 to 11 amino acids, the
amino acid at position 2 is tyrosine, phenylalanine, methionine, or
tryptophan, and the amino acid at the C-terminus is phenylalanine,
leucine, isoleucine, tryptophan, or methionine (J Immunol., 152:3913,
1994; Immunogenetics, 41:178, 1995; J. Immunol., 155:4307, 1994).
Likewise, the motifs shown in the following Table 1 are known for HLA-A2
(Immunogenetics, 41:178, 1995; J. Immunol., 155:4749, 1995).
TABLE-US-00001
TABLE 1
Type of Amino acid at the second Amino acid
HLA-A2 position from N-terminus at C-terminus
HLA-A0201 L, M V, L
HLA-A0204 L L
HLA-A0205 V, L, I, M L
HLA-A0206 V, Q V, L
HLA-A0207 L L
(the peptides are 8-11 amino acids in length)
[0073] In addition, any peptide sequence expected to be capable of binding
to HLA antigens may be searched on the internet using the BIMAS software
of NH-I.
[0074] By analysis of antigen peptides bound to various HLA molecules, it
has been shown that the length of the peptides is usually about 8 to 14
amino acids long, although antigen peptides of 14 or more amino acids in
length are also observed for HLA-DR, -DP, and -DQ (Immunogenetics,
41:178, 1995).
[0075] It is easy to select peptide portions involved in such motifs from
the amino acid sequence of the protein of the present invention. Such
peptide portions involved in the above motif structures can be easily
selected by inspecting the amino acid sequence of tumor antigen protein
SART-3 (SEQ ID NO: 2). Further, it is easy to select any sequence
expected to be capable of binding to HLA antigens by search on internet
as shown above. Tumor antigen peptides of the present invention can be
identified by synthesizing candidate peptides thus selected according to
the method described above and conducting an assay for determining
whether or not a complex between the candidate peptide and an HLA antigen
is recognized by CTL, in other words, whether or not a candidate peptide
has an activity as a tumor antigen peptide.
[0076] A specific example of method for identifying tumor antigen peptides
of the present invention is a method described in J. Immunol.,
154:2257,1995. Specifically, peripheral blood lymphocytes are isolated
from a human who is positive for the type of an HLA antigen that is
expected to present the candidate peptide, and are stimulated in vitro by
adding the candidate peptide. If the candidate induces CTL that
specifically recognizes the HLA-antigen-presenting cells pulsed with the
candidate peptide, it is indicated that the particular candidate peptide
may function as a tumor antigen peptide. In this connection, the presence
or absence of CTL induction can be detected, for example, by measuring
the amount of various cytokines (for example, IFN-.gamma.) produced by
CTLs in response to the antigen peptide-presenting cells using, for
example, an ELISA method. Alternatively, a method in which the
cytotoxicity of CTLs against antigen peptide-presenting cells labeled
with .sup.51Cr is measured (.sup.51Cr release assay, Int. J Cancer,
58:317, 1994) may also be used for such detection.
[0077] Furthermore, the above detection can also be achieved as follows.
An expression plasmid expressing a cDNA for the type of an HLA antigen
that is expected to present the candidate peptide is incorporated into,
for example, COS-7 cells (ATCC No. CRL1651) or VA-13 cells (RIKEN CELL
BANK, The Institute of Physical and Chemical Research), and the resultant
cells are pulsed with the candidate peptide. The cells are then reacted
with the CTLs that are restricted to the type of the HLA antigen expected
to present the candidate peptide as described above, and the amount of
various cytokines (for example, IFN-.gamma.) produced by said CTLs is
measured (J. Exp. Med., 187:277, 1998).
[0078] SART-3 contains HLA-A24- or HLA-A2-restricted tumor antigen peptide
portions. In order to identify HLA-A24-restricted tumor antigen peptides,
HLA-A24 cDNA (Cancer Res., 55:4248-4252, 1995, Genbank Accession No.
M64740) can be used as a cDNA encoding the HLA antigen, whereas those
CTLs such as KE-4CTL (FERM BP-5954) as well as CTLs that are prepared by
peptide-stimulation of human peripheral blood lymphocytes can be used as
the CTLs described above. Likewise, for HLA-A2-restricted tumor antigen
peptides, identification of such tumor antigen peptides can be achieved
using HLA-A2 cDNA (Genbank Accession No. M84379), and using as the CTLs
described above those CTLs such as OK-CTL (FERM BP-6818) as well as CTLs
that are prepared by peptide-stimulation of human peripheral blood
lymphocytes.
[0079] Specific examples of various assays as described above are
illustrated in Examples 4, 6, and 8 hereinafter.
[0080] In cases like HLA-A26 wherein a relevant peptide motif is not
elucidated, tumor antigen peptides of the present invention can be
identified, for example, according to the method described in WO
97/46676, which method is different from that in the above cases wherein
the sequence rules (motifs) have been elucidated, provided that a CTL
line recognizing a complex between HLA-A26 and a tumor antigen peptide is
available.
[0081] The methods for identifying tumor antigen peptides as described
above may be hereinafter collectively referred to as "assay methods for
tumor antigen peptides".
[0082] As described above, it is known that the sequences of tumor antigen
peptides that are bound to and presented on HLA-A24 obey a certain rule
(motif), and in particular, the motif is that, in a sequence of a peptide
consisting of 8 to 11 amino acids, the amino acid at position 2 is
tyrosine, phenylalanine, methionine, or tryptophan, and the amino acid at
the C-terminus is phenylalanine, leucine, isoleucine, tryptophan, or
methionine (J. Immunol., 152:3913, 1994; Immunogenetics, 41:p 178, 1995;
J. Immunol., 155:p 4307, 1994). Likewise, a similar rule (motif) can be
found in the sequences of tumor antigen peptides that are bound to and
presented on HLA-A2, and in particular, the motifs shown in the above
Table 1 are known (Immunogenetics, 41, p 178, 1995; J. Immunol., 155:p
4749, 1995). As shown above, sequences expected to be capable of binding
to HLA antigens may be further searched on the Internet using the BIMAS
software of NIH,
[0083] Accordingly, HLA-A24- and HLA-A2-restricted tumor antigen peptides
among the tumor antigen peptides of the present invention are exemplified
by those tumor antigen peptides that are partial peptides involved in
such motif structures or structures expected to be capable of binding to
the HLAs in the amino acid sequence of SART-3 shown in SEQ ID NO: 2 and
that are capable of binding to respective HLA antigens and being
recognized by CTLs.
[0084] Particular examples of HLA-A24-restricted tumor antigen peptides
described above include those tumor antigen peptides that comprise all or
part of an amino acid sequence shown in any one of SEQ ID NOs: 3-24 and
that are capable of binding to an HLA-A24 antigen and being recognized by
CTL. Likewise, particular examples of HLA-A2-restricted tumor antigen
peptides include those tumor antigen peptides that comprise all or part
of an amino acid sequence shown in any one of SEQ ID NOs: 25-52 and that
are capable of binding to an HLA-A2 antigen and being recognized by CTL.
[0085] Specifically, examples of tumor antigen peptides of the present
invention include: [0086] 1) peptides that consist of an amino acid
sequence shown in any one of SEQ ID NOs: 3-52, and [0087] 2) peptides
that comprise the full length or a consecutive portion of an amino acid
sequence shown in any one of SEQ ID NOs: 3-52 and that are elongated in
the N-terminal and/or C-terminal direction as compared to said amino acid
sequence, or peptides consisting of a consecutive portion of an amino
acid sequence shown in any one of SEQ ID NOs: 3-52, said peptides being
capable of binding to respective HLA antigens and being recognized by
CTLs. The peptides in the above 2) may be about 8-11 amino acids in
length in view of the fact that they are bound and presented by
respective HLA antigens.
[0088] Suitable examples of HLA-A24-restricted tumor antigen peptides of
the present invention include those tumor antigen peptides that comprise
all or part of the amino acid sequence shown in any one of SEQ ID NOs:
3-9 and that are capable of binding to an HLA-A24 antigen and being
recognized by CTL. Specifically, examples are: [0089] 1) peptides that
consist of the amino acid sequence shown in any one of SEQ ID NOs: 3-9,
and [0090] 2) peptides that comprise the full length or a consecutive
portion of the amino acid sequence shown in any one of SEQ ID NOs: 3-9
and that are elongated in the N-terminal and/or C-terminal direction as
compared to said amino acid sequence, or peptides that consist of a
consecutive portion of the amino acid sequence shown in any one of SEQ ID
NOs: 3-9, said peptides being capable of binding to HLA-A24 antigens and
being recognized by CTLs. The peptides in the above 2) may be about 8-11
amino acids in length in view of the fact that they are bound to and
presented on HLA-A24 antigens.
[0091] Suitable examples of HLA-A2-restricted tumor antigen peptides of
the present invention include those tumor antigen peptides that comprise
all or part of the amino acid sequence shown in any one of SEQ ID NOs:
25-29 and that are capable of binding to an HLA-A2 antigen and being
recognized by CTL. Specifically, examples are: [0092] 1) peptides that
consist of the amino acid sequence shown in any one of SEQ ID NOs: 25-29,
and [0093] 2) peptides that comprise the full length or a consecutive
portion of the amino acid sequence shown in any one of SEQ ID NOs: 25-29
and that are elongated in the N-terminal and/or C-terminal direction as
compared to said amino acid sequence, or peptides that consist of a
consecutive portion of the amino acid sequence shown in any one of SEQ ID
NOs: 25-29, said peptides being capable of binding to HLA-A2 antigens and
being recognized by CTLs. The peptides in the above 2) may be about 8-11
amino acids in length in view of the fact that they are bound to and
presented on HLA-A2 antigens.
[0094] In the present invention, the term "derivative having properties
functionally equivalent to those of a tumor antigen peptide" (hereinafter
may be simply referred to as tumor antigen peptide derivative) refers to
an altered peptide, of which the amino acid sequence contains alteration
of one or more, preferably one to several, amino acid residues of an
amino acid sequence of a tumor antigen peptide of the present invention,
and which has the properties as a tumor antigen peptide, that are to be
capable of binding to an HLA antigen and being recognized by CTL.
Accordingly, all altered peptides fall within the scope of tumor antigen
peptide of the present invention so long as they contains alteration of
one or more amino acid residues of an amino acid sequence of a tumor
antigen peptide of the present invention, and have the properties as
tumor antigen peptides, that is, are capable of binding to 1-ILA antigens
and being recognized by CTLs.
[0095] In this context, "alteration" of an amino acid residue means
substitution, deletion and/or addition (including addition of amino acids
to the N-terminus and/or the C-terminus of the peptide) of an amino acid
residue, with substitution of an amino acid residue being preferred. For
alterations involving substitution of an amino acid residue, although the
number and the position of amino acid residues to be substituted may be
determined arbitrarily so long as the activity as a tumor antigen peptide
is retained, it is preferred that one to several residues are substituted
in light of the fact that tumor antigen peptides are usually about 8 to
14 amino acids in length as described above.
[0096] A preferred length of tumor antigen peptide derivatives of the
present invention is about 8 to 14 amino acids as in case of the tumor
antigen peptide described above, although derivatives of 14 or more amino
acids long may also be possible for HLA-DR, -DP, and -DQ.
[0097] Such tumor antigen peptide derivatives of the present invention may
be identified by synthesizing altered peptides that contain alteration of
a part of a tumor antigen peptide of the present invention in accordance
with the above preparation of peptide, and by conducting the above assay
for tumor antigen peptides.
[0098] As described above, the sequence rules (motifs) for peptides that
are bound to and presented on HLA types such as HLA-A1, -A0201, -A0204,
-A0205, -A0206, -A0207, -A11, -A24, -A31, -A6801, -B7, -B8, -B2705, -B37,
-Cw0401, and -Cw0602 have been elucidated. As shown above, peptide
sequences expected to be capable of binding to HLA antigens may be
further searched on internet using the internet using the BIMAS software
of NIH. Consequently, tumor antigen peptide derivatives containing the
alteration of the amino acids in a tumor antigen peptide of the present
invention can be prepared on the basis of such motifs.
[0099] For example, regarding the motif for antigen peptides that are
bound to and presented on HLA-A24, it is known as described above that in
the sequence of a peptide consisting of 8 to 11 amino acids, the amino
acid at position 2 is tyrosine, phenylalanine, methionine, or tryptophan,
and the amino acid at the C-terminus is phenylalanine, leucine,
isoleucine, tryptophan, or methionine (J. Immunol., 152:3913, 1994;
Immunogenetics, 41:178, 1995; J. Immunol., 155:4307, 1994). Likewise, the
motifs shown in the above Table 1 are known for HLA-A2. In addition,
peptide sequences expected to be capable of binding to HLA antigens are
laid open on the internet (BIMAS software from NIH), and amino acid
residues having properties similar to those of amino acids according to
the motifs may also be possible. Accordingly, examples of tumor antigen
peptide derivatives of the present invention include those peptide
derivatives that comprise all or part of an amino acid sequence of the
tumor antigen peptide of the present invention in which one or more amino
acid residues at any positions that may be allowed for substitution
according to the motifs (for HLA-A24 and HLA-A2, position 2 and the
C-terminus) are substituted by other amino acids (preferably, which is
the amino acid expected to be capable of binding to the antigens
according to the above internet), and which derivatives have activity of
binding to HLA antigens and being recognized by CTLs. Preferred examples
are those tumor antigen peptide derivatives that comprise all or part of
an amino acid sequence in which amino acid residues to be substituted are
selected from those at said positions according to the above motifs, and
which derivatives have the above activity. A preferred length of "all or
part" of an amino acid sequence is about 8 to 14 amino acids, although it
may be a length of 14 or more amino acids for HLA-DR, -DP, and -DQ.
[0100] Examples of HLA-A24- or HLA-A2-restricted tumor antigen peptide
derivatives include those peptide derivatives that comprise all or part
of an amino acid sequence in which one or more amino acid residues at
positions that are allowed for substitution according to the above
motifs, specifically, at position 2 and/or the C-terminus, of a peptide
derived from the amino acid sequence of SART-3 having a binding motif for
HLA-A24 or HLA-A2 are substituted by other amino acid residues
(preferably, which is the amino acid expected to be capable of binding to
the antigens according to the above internet), and which derivatives have
the above activity. Preferred examples are those tumor antigen peptide
derivatives that comprise all or part of an amino acid sequence in which
the amino acid residues at position 2 and/or the C-terminus are
substituted by the amino acid residues involved according to the above
motifs, and which derivatives have the above activity. In such HLA-A24-
or HLA-A2-restricteid tumor antigen peptide derivatives, a preferred
length of "all or part" of the amino acid sequence is about 8 to 11 amino
acids.
[0101] In particular, examples are those tumor antigen peptide derivatives
that comprise all or part of an amino acid sequence in which the amino
acid residues at position 2 and/or the C-terminus of an amino acid
sequence shown in any one of SEQ ID NOs: 3 to 52 are substituted by other
amino acid residues (preferably, which is the amino acid expected to be
capable of binding to the antigens according to internet as shown above)
and which derivatives have the above activity. Preferred examples are
those tumor antigen peptide derivatives that comprise all or part of an
amino acid sequence in which the amino acid residues at position 2 and/or
the C-terminus of an amino acid sequence shown in any one of SEQ ID NOs:
3 to 52 are substituted by the amino acid residues involved according to
the above motifs and which derivatives have the above activity.
Specifically, examples of HLA-A24-restricted tumor antigen derivatives
are those tumor antigen peptide derivatives that comprise all or part of
an amino acid sequence in which the amino acid residue at position 2 of
an amino acid sequence shown in any one of SEQ ID NOs: 3 to 24 is
substituted by tyrosine, phenylalanine, methionine, or tryptophan and/or
the amino acid residue at the C-terminus is substituted by phenylalanine,
leucine, isoleucine, tryptophan, or methionine and which derivatives have
the above activity. Likewise, examples of HLA-A2-restricted tumor antigen
derivatives are those tumor antigen peptide derivatives that comprise all
or part of an amino acid sequence in which the amino acid residue at
position 2 of an amino acid sequence shown in any one of SEQ ID NOs: 25
to 52 is substituted by leucine, methionine, valine, isoleucine, or
glutamine, and/or the amino acid residue at the C-terminus is substituted
by valine or leucine and which derivatives have the above activity.
[0102] Suitable examples of HLA-A24-restricted tumor antigen peptide
derivatives of the present invention are those tumor antigen peptide
derivatives that comprise all or part of an amino acid sequence in which
the amino acid residues at position 2 and/or the C-terminus of the amino
acid sequence shown in any one of SEQ ID NOs: 3 to 9 are substituted by
other amino acid residues and which derivatives have the above activity,
More preferred examples are those tumor antigen peptide derivatives
comprise all or part of an amino acid sequence in which the amino acid
residue at position 2 of an amino acid sequence shown in any one of SEQ
ID NOs: 3 to 9 is substituted by tyrosine, phenylalanine, methionine, or
tryptophan and/or the amino acid residue at the C-terminus is substituted
by phenylalanine, leucine, isoleucine, tryptophan, or methionine and
which derivatives have the above activity. Suitable examples of such
tumor antigen peptide derivatives are shown in SEQ ID NOs: 53 to 59.
[0103] Suitable examples of HLA-A2-restricted tumor antigen peptide
derivatives of the present invention are those tumor antigen peptide
derivatives that comprise all or part of an amino acid sequence in which
the amino acid residues at position 2 and/or the C-terminus of the amino
acid sequence shown in any one of SEQ ID NOs: 25 to 29 are substituted by
other amino acid residues and which derivatives have the above activity.
More preferred examples are those tumor antigen peptide derivatives
comprise all or part of an amino acid sequence in which the amino acid
residue at position 2 of an amino acid sequence shown in any one of SEQ
ID NOs: 25 to 29 is substituted by leucine, methionine, valine,
isoleucine, or glutamine, and/or the amino acid residue at the C-terminus
is substituted by valine or leucine, and which derivatives have the above
activity. Suitable examples of such tumor antigen peptide derivatives are
shown in SEQ ID NOs: 60 to 64.
[0104] A tumor antigen peptide or its derivative of the present invention
can be used solely or together with other one or more of them as a
pharmaceutical composition for treating or preventing tumors, Namely, the
present invention provides a pharmaceutical composition for treatment or
prevention for tumors, which comprises the tumor antigen peptides or
derivatives thereof as an active ingredient. When the composition for
treating or preventing tumors which comprises as an active ingredient a
tumor antigen peptide or its derivative of the present invention is
administered to a SART-3-positive patient, the tumor antigen peptide or
derivative thereof is presented with an HLA antigen of antigen-presenting
cells, and therefore, CTLs specific for the presented HLA antigen complex
proliferates and destroys the tumor cells. As a result, the tumor of the
patient may be treated, or proliferation or metastasis of the tumor may
be prevented. SART-3 is developed extensively on the squamous cell
carcinoma such as esophageal cancer, and therefore, the composition for
treating or preventing tumors according to the present invention is
advantageous in terms of wide applicability. The squamous cell carcinoma
often exhibits a resistance to chemotherapy and radiotherapy, and,
therefore, the composition for treating tumors of the present invention
also can achieve an increased therapeutic effect by its combined use.
[0105] The composition for treating or preventing tumors comprising as an
active ingredient a tumor antigen peptide or its derivative of the
present invention may be administered together with an adjuvant in order
to effectively establish the cellular immunity, or may be administered in
a particulate dosage form. For such purpose, those adjuvants described in
the literature (Clin. Microbiol. Rev., 7:277-289, 1994) are applicable.
In addition, liposomal preparations, particulate preparations in which
the ingredient is bound to beads having a diameter of several pm, or
preparations in which the ingredient is attached to lipids are also
possible. Administration may be achieved, for example, intradermally,
hypodermically, or by intravenous injection, Although the amount of a
tumor antigen peptide or its derivative of the present invention in the
formulation to be administered may be adjusted as appropriate depending
on, for example, the disease to be treated, the age and the body weight
of the particular patient, it is typical to administer 0.0001 mg to 1000
mg, preferably 0.001 mg to 100 mg, and more preferably 0.01 mg to 10 mg
every several days to every several months.
[0106] Furthermore, a recombinant DNA that contains at least one DNA
encoding a tumor antigen peptide or its derivative of the present
invention, or a recombinant polypeptide obtainable by expression of said
recombinant DNA may be also comprised as an active ingredient in the
composition for treating or preventing tumors according to the present
invention, which details are provided below.
[0107] In this connection, the term "recombinant DNA" refers to any DNA
encoding a partial polypeptide, a partial peptide consisting of a part of
the tumor antigen protein of the present invention, derivatives thereof,
polytope in which such peptides are combined, or the like. All DNAs fall
within the scope of recombinant DNA of the present invention so long as
they contain at least one DNA encoding the tumor antigen peptide or its
derivative of the present invention. Such recombinant DNA may be
incorporated into a suitable expression vector to make an active
ingredient comprised in the pharmaceutical composition for treating or
preventing tumors.
[0108] The term "polytope" refers to a combined peptide of many CTL
epitopes, and DNAs encoding such polytopes have recently been used for
DNA vaccination. See, for example, J. of Immunology, 160, p 1717, 1998.
DNA encoding the polytope of the present invention can be prepared by
ligating one or more DNAs encoding the tumor antigen peptide or its
derivative of the present invention each other, and, if desired, ligating
a DNA encoding other tumor antigen peptide(s).
[0109] Recombinant DNA of the present invention can be easily prepared
according to typical DNA synthesis and genetic engineering method, for
example, according to the description of a standard text such as
"Molecular Cloning", 2nd ed., Cold Spring Harbor Laboratory Press (1989).
Incorporation of such recombinant DNA into expression vectors may be also
conducted according to the standard text and the like.
[0110] Determination whether or not a recombinant DNA of the present
invention as prepared above may generate tumor antigen peptides that are
capable of binding to HLA antigens and being recognized by CTLs may be
achieved in accordance with, for example, the method as mentioned above
for determining the activity of DNA of the present invention. Likewise, a
method for using the present recombinant DNA as medicaments or
prophylactics may be in accordance with the method for the DNA of the
present invention.
[0111] As shown above, "recombinant polypeptide" obtainable by expression
of the recombinant DNA of the invention may also be used for a
pharmaceutical composition for treating or preventing tumors.
[0112] The recombinant polypeptide of the invention may be prepared in a
similar manner to that for the protein of the invention as described
above. Likewise, determination whether or not a recombinant polypeptide
of the present invention as prepared above may have certain activity may
be achieved in accordance with a similar manner to that for the protein
of the present invention. Further, a method for using the present
recombinant polypeptide as medicaments or prophylactics may be in
accordance with the above method for the protein or peptide of the
present invention.
[0113] The present invention also provides antibodies that specifically
bind to a protein of the present invention, a tumor antigen peptide of
the present invention or a derivative thereof. Such antibodies are easily
prepared, for example, according to a method described in "Antibodies: A
Laboratory Manual", Lane, H. D. et al. eds., Cold Spring Harbor
Laboratory Press, New York, 1989. Specifically, antibodies that recognize
a tumor antigen peptide or its derivative of the present invention and
antibodies that further neutralize its activity may easily be prepared
using the tumor antigen peptide or derivative thereof to appropriately
immunize an animal in the usual manner. Such antibodies may be used in
affinity chromatography, immunological diagnosis, and the like.
Immunological diagnosis may be selected as appropriate from
immunoblotting, radioimmunoassay (RIA), enzyme-linked immunosorbent assay
(ELISA), a fluorescent or luminescent assay, and the like.
[0114] A tumor antigen peptide, derivative thereof, tumor antigen protein,
gene therefor of the present invention, or a recombinant DNA or
recombinant polypeptide of the present invention may also be used in
vitro for treatment of tumor patients as follows.
[0115] On usage of a tumor antigen peptide, derivative thereof, tumor
antigen protein, or gene therefor in treatment of tumors, it is important
to establish an administration method which can efficiently induce
specific CTLs in the body of a patient. As one of the means therefor, the
present invention provides an antigen-presenting cell in which a complex
between an HLA antigen and a tumor antigen peptide or its derivative of
the present invention is presented on the surface of a cell having
antigen-presenting ability isolated from a tumor patient, and also
provides a pharmaceutical composition for treating tumors, which
comprises said antigen-presenting cell as an active ingredient.
[0116] In this context, the "cell having antigen-presenting ability" is
not limited to a specific cell so long as it is a cell expressing on its
cell surface an HLA antigen allowing a tumor antigen peptide or its
derivative of the present invention to be presented, and dendritic cells,
which is reported to have especially a high antigen-presenting ability,
are preferred.
[0117] Substances to be added to prepare an antigen-presenting cell of the
present invention from the above-mentioned cell having an
antigen-presenting ability may be tumor antigen peptides or their
derivatives of the present invention, as well as DNAs, proteins,
recombinant DNAs or recombinant polypeptides of the present invention.
When used in the form of a protein or DNA, it is necessarily introduced
into cells.
[0118] In order to prepare antigen-presenting cells of the present
invention, cells having an antigen-presenting ability are isolated from a
tumor patient, and pulsed ex vivo with a tumor antigen peptide, a
derivative thereof, a tumor antigen protein, or recombinant polypeptide
of the present invention to present a complex between an HLA antigen and
said tumor antigen peptide or derivative thereof (Cancer Immunol.
Immunother, 46:82, 1998; J. Immunol. 158:p 1796, 1997; Cancer Res.,
59:1184,1999). When dendritic cells are used, antigen-presenting cells of
the present invention may be prepared, for example, by isolating
lymphocytes from peripheral blood of a tumor patient using Ficoll method,
removing non-adherent cells, incubating the adherent cells in the
presence of GM-CSF and IL-4 to induce dendritic cells, and incubating and
pulsing said dendritic cells with a tumor antigen peptide or tumor
antigen protein of the present invention, or the like.
[0119] When antigen-presenting cells of the present invention are prepared
by introducing a DNA or a recombinant DNA of the present invention into
the aforementioned cells having an antigen-presenting ability, said gene
may be in the form of DNA or RNA. In particular, DNA may be used
consulting, for example, Cancer Res., 56:5672, 1996 or J. Immunol., 161:p
5607, 1998, and RNA may be used by consulting, for example, J. Exp. Med.,
184:p 465, 1996.
[0120] A pharmaceutical composition for treating tumors which comprises
the above antigen-presenting cells as an active ingredient preferably
contains physiological saline, phosphate buffered saline (PBS), medium,
or the like to stably maintain the antigen-presenting cells. It may be
administered, for example, intravenously, subcutaneously, or
intradermally. By reintroducing such composition for treating tumors
which comprises antigen-presenting cells as an active ingredient into the
body of the patient, specific CTLs are efficiently induced in
SART-3-positive patient so as to achieve treatment of the tumor. It
should be undisputed that the HLA types need be compatible between the
patient and the peptide used, such that an HLA-A24-restricted tumor
antigen peptide or a derivative thereof must be used with an
HLA-A24-positive tumor patient.
[0121] In addition, in vitro use of a tumor antigen peptide, a derivative
thereof, a tumor antigen protein, a DNA therefor a recombinant DNA or
recombinant polypeptide according to the present invention in the
following adoptive immunotherapy may be provided as another example of
their use.
[0122] For melanomas, it has been observed that an adoptive immunotherapy
wherein tumor-infiltrating T cells taken from the patient himself/herself
are cultured ex vivo in large quantities, and then returned into the
patient, achieves a therapeutic effect (J. Natl. Cancer. Inst., 86:1159,
1994). Likewise, in mouse melanoma, suppression of metastasis has been
observed by in vitro stimulation of splenocytes with tumor antigen
peptide TRP-2, thereby proliferating CTLs specific for the tumor antigen
peptide, and administering said CTLs into a melanoma-grafted mouse (J.
Exp. Med., 185:453, 1997). This resulted from in vitro proliferation of
CTLs that specifically recognize the complex between an HLA antigen of
antigen-presenting cells and the tumor antigen peptide. Accordingly, a
method for treating tumors is believed to be useful, which comprises
stimulating in vitro peripheral blood lymphocytes from a patient using a
tumor antigen peptide, a derivative thereof, a tumor antigen protein, or
a DNA therefor according to the present invention to proliferate
tumor-specific CTLs, and subsequently returning the CTLs into the
patient.
[0123] Thus, the present invention provides CTLs that specifically
recognize a complex between the HLA antigen and the tumor antigen peptide
or derivative thereof, and also provides a pharmaceutical composition for
treating tumors which comprises said CTLs as an active ingredient. Such
composition preferably contains physiological saline, phosphate buffered
saline (PBS), medium, or the like to stably maintain CTLs. It may be
administered, for example, intravenously, subcutaneously, or
intradermally. By reintroducing the composition for treating tumors which
comprises CTLs as an active ingredient into the body of the patient, the
toxic effect of CTLs against the tumor cells is enhanced in
SART-3-positive patient and thereby destroys the tumor cells to achieve
treatment of the tumor.
[0124] Tumor antigen peptides, derivatives thereof, tumor antigen
proteins, or recombinant polypeptide thereof according to the present
invention may be also used as an active ingredient of a diagnostic agent
for diagnosing tumors. Specifically, by using a tumor antigen peptide, or
derivative thereof according to the present invention itself as a
diagnostic agent to detect the presence of antibodies in a sample (such
as blood or a tumor tissue) obtained from a patient suspected to have a
tumor, early detection of tumors and diagnosis of recurrence and
metastasis are possible. The same procedure can also be used for
selection of tumor patients to whom medicaments comprising as an active
ingredient, for example, a tumor antigen peptide of the present invention
can be applied. In particular, such diagnosis may be conducted using
immunoblotting, RIA, ELISA, or a fluorescent or luminescent assay.
[0125] Furthermore, in recent years, a new detection method has been
established for detecting antigen-specific CTLs using a complex between
the antigen peptide and an HLA antigen (Science, 274:94,1996). Early
detection of tumors and diagnosis of reoccurrence or metastasis are
possible by applying a complex between a tumor antigen peptide or
derivative thereof according to the present invention and an HLA antigen
to the above detection method, and thereby detecting tumor
antigen-specific CTLs. The same procedure can also be used for selection
of tumor patients to whom a medicine comprising as an active ingredient,
for example, a tumor antigen peptide of the present invention can be
applied, or for determination of the therapeutic effect of said
medicament. Thus, the present invention also provides a diagnostic agent
for tumors comprising a tumor antigen peptide or derivative thereof
according to the present invention.
[0126] In particular, such diagnosis may be conducted by preparing a
tetramer of a complex between an HLA antigen fluorescently labeled
according to the method described in the literature (Science, 274:94,
1996) and a tumor antigen peptide, and using it to quantitatively
determine the antigen peptide-specific CTLs in peripheral blood
lymphocytes of a patient suspected to have a tumor using a flow
cytometer.
[0127] The present invention also provides OK-CTL (deposit number FERM
BP-6818) that is CTL established from tumor-infiltrating lymphocytes
derived from colon cancer, OK-CTL has proved to be HLA-A2-restricted.
Accordingly, tumor antigen proteins and HLA-A2-restricted tumor antigen
peptides may be newly found by using OK-CTL. For details, see Example 8
below.
BEST MODE FOR CARRYING OUT THE INVENTION
[0128] The present invention is further illustrated by the following
examples, but is not limited by these examples in any respect.
Reference 1
Establishment of Cytotoxic T Lymphocyte (CTL) Cell Line Against Esophageal
Cancer Cell Line
[0129] According to the description of Nakao et al., Cancer Res.,
55:4248-4252 (1995), CTL against esophageal cancer cell line KE-4, which
belongs to squamous cell carcinomas when classified on the basis of
tissue type, was established from peripheral blood mononuclear cells of a
patient, named KE-4CTL, and used in the following experiments. Esophageal
cancer cell lines KE-4 and KE-4CTL have been deposited at The National
Institute of Bioscience and Human Technology (1-1-3 Higashi, Tsukuba,
Ibaraki, Japan) under International Deposition Nos. FERM BP-5955 and FERM
BP-5954, respectively, both on May 23, 1997. Further, typing of HLA class
I molecules of KE-4 was conducted according to the above-mentioned
description of Nakao et al., to find that they are HLA-A2402, -A2601,
-B54, -B60, -Cw1, and -Cw3.
Reference 2
[0130] Preparation of HLA-A2402 cDNA
[0131] According to the description of Nakao et al., Cancer Res., 55:
4248-4252 (1995), a recombinant plasmid was prepared from KE-4 by
incorporating eDNA for HLA-A2402 (Genbank Accession No. M64740) into an
expression vector pCR3 (INVITROGEN).
Reference 3
[0132] Preparation of cDNA Library Derived from KE-4
[0133] Poly (A).sup.+ mRNA was prepared from KE-4 by isolation of total
RNA fraction and purification on oligo (dT) column using mRNA
Purification system (Pharmacia Biotech) according to the manufacturer's
protocol. eDNAs having Not I adapter and Sea I adapter linked to each
terminus were prepared from the mRNAs using SuperScript Plasmid System
(GIBCO BRL) according to the manufacturer's protocol, and then ligated
into the restriction sites Not I and Sal I of an expression vector,
plasmid pSV-SPORT1 (GIBCO BRL), to yield recombinant plasmids. The
recombinant plasmids were introduced into E. coli. ElectroMAX DH10B.TM.
cells (GIBCO BRL) using electric pulses in Gene Pulser (Bio-Rad) under a
condition of 25 .mu.F and 2.5 kV. Transformants into which the
recombinant plasmids had been introduced were selected in LB medium (1%
bacto-trypton, 0.5% yeast extract, 0.5% NaCl, pH7.3) containing
ampicillin (50 .mu.g/ml).
EXAMPLE 1
Screening of Novel Tumor Antigen Protein Gene
[0134] The recombinant plasmid DNAs were recovered as follows, from pools
of about 100 transformants described in Reference 3. A hundred
transformants were introduced and cultured in each well of 96-well
U-bottomed microplate containing LB medium plus ampicillin (50 .mu.g/ml).
Part of the culture was then transferred to another 96-well U-bottomed
microplate containing 0.25 ml of TYGPN medium per well (F. M. Ausubel et
al., Current Protocols in Molecular Biology, John Wiley & Sons, Inc.),
and cultured at 37.degree. C. for 48 hours. The remaining cultures in LB
medium on the microplate were stored in frozen. Preparation of
recombinant plasmid DNAs from transformants cultured in TYGPN medium was
achieved in the microplate by the alkaline lysis method (F. M. Ausubel et
al., Current Protocols in Molecular Biology, John Wiley & Sons, Inc.).
The recombinant plasmid DNAs recovered by isopropanol precipitation were
suspended in 50 .mu.l of 10 mM Tris, 1 mM EDTA, pH 7.4, containing 20
ng/ml RNase.
[0135] The recombinant plasmid for KE-4 eDNA and the recombinant plasmid
for HLA-A2402 cDNA were doubly transfected into fibroblast cell line
VA-13 cells (RIKEN CELL BANK, The Institute of Physical and Chemical
Research; Ann. Med. Exp. Biol. Fenn., 44:242-254, 1966) using the
Lipofectin method as follows. Seven thousands VA-13 cells were placed
into each well of 96-well flat-bottomed microplate, and incubated for 2
days in 100 .mu.l of RPMI 1640 medium containing 10% FCS. Using
Lipofectin reagent (GIBCO BRL), a 30 .mu.l portion of mixture 70 .mu.l
consisting of 25 .mu.l of the recombinant plasmid for KE-4 cDNA
corresponding to about 100 transformants, 10 .mu.l (200 ng) of the
recombinant plasmid for HLA-A2402 cDNA described in Reference 2, and 35
.mu.l of about 35-fold diluted Lipofectin reagent was added to VA-13
cells, and allowed to doubly transfect them. Transfectants were prepared
in duplicate. After 5 hours, the transfectants was added with 200 .mu.l
of culture medium containing 10% FCS, and further incubated at 37.degree.
C. for 72 hours. After removing the culture medium, 10,000 KE-4CTL cells
were added to each well, and cultured at 37.degree. C. for 24 hours in
100 .mu.l of culture medium containing 10% FCS and 25 U/ml IL-2. The
culture medium was recovered, and the amount of IFN-.gamma. in the
culture was measured by ELISA as described below.
[0136] Specifically, an anti-human IFN-.gamma. mouse monoclonal antibody
was adsorbed on wells of 96-well microplate as a solid-phased antibody,
and after blocking non-specific bindings with bovine serum albumin, the
antibody was allowed to bind to IFN-.gamma. in the above-described
sample. Anti-human IFN-.gamma. rabbit polyclonal antibody as a detection
antibody was then allowed to bind, and after binding to an anti-rabbit
immunoglobulin goat antibody labeled with alkaline phosphatase,
para-nitrophenyl phosphate was reacted as a chromogenic substrate, After
quenching the reaction by adding an equal volume of 1N NaOH, absorbance
at 405 nm was measured. The absorbance was compared with that obtained
with standard IFN-.gamma. to determine the amount of IFN-.gamma. in the
sample.
[0137] Regarding the groups in which high production of IFN-.gamma. was
observed, the corresponding frozen-stored pools of about 100
transformants containing recombinant plasmids for KE-4 cDNA were used in
the following screening. The pools of the transformants were plated on LB
agar medium containing ampicillin (50 .mu.g/ml) to obtain colonies. Two
hundreds colonies for each group were cultured as described above so that
a single kind of transformant is included in each well, thereby preparing
recombinant plasmid DNAs for KE-4 cDNA. Then, VA-13 cells were doubly
transfected with the recombinant plasmid for KE-4 cDNA and the
recombinant plasmid for HLA-A2402 cDNA, followed by co-cultivation with
KE-4CTL, and IFN-.gamma. produced due to KE-4CTL reaction was
quantitatively determined as described above so as to select positive
plasmids. In this manner, a single KE-4 cDNA recombinant plasmid clone
was selected and named clone 13. Additional analysis revealed that clone
13 was incorporated with about 1.2 kb cDNA. Furthermore, similar
procedures were repeated with clone 13 to determine the amount of
IFN-.gamma. produced by KE-4CTL according to a similar method to that
described above. The results are shown in Table 2.
TABLE-US-00002
TABLE 2
Amount of IFN-.gamma. produced
Target cell by KE-4CTL (pg/ml)
VA-13 + HLA-A2402 326
VA-13 + HLA-A2402 + clone 13 775
[0138] When compared to VA-13 transfected with only HLA-A2402, KE-4CTL
reacted more strongly to VA-13 doubly transfected with HLA-A2402 and
clone 13, and produced more IFN-.gamma.. This result indicated that the
protein encoded by clone 13 is a tumor antigen protein.
EXAMPLE 2
[0139] Cloning of Full-Length cDNA Clone Encoding Tumor Antigen Protein
[0140] In order to determine the length of the full-length cDNA gene
incorporated in clone 13 obtained in Example 1, Northern Hybridization
was conducted as described blow.
[0141] First of all, RNAs were prepared from esophageal cancer cell line
KE-4 using RNAzol B (TEL-TEST, Inc.). Five .mu.g of RNA was denatured in
the presence of formamide and formaldehyde, electrophoresed on agarose,
and then transferred and fixed onto Hybond-N+ Nylon membrane (Amersham).
The inserted sequence region of clone 13 was labeled with .sup.32P using
Multiprime DNA labeling system (Amersham) to prepare a DNA probe.
According to the known method (Nakayama et al., Bio-Jikken-Illustrated,
vol. 2, "Idenshi-Kaiseki-No-Kiso (A Basis for Gene Analysis)", pp.
148-151, Shujunsha, 1995), this probe was allowed to hybridize to RNAs on
the membranes, and subjected to autoradiography to detect mRNA for cDNA
incorporated in clone 13, indicating that the mRNA was about 3.8 kb in
full length. Then, the full-length cDNA clone containing clone 13 as
prepared above was cloned. KE-4-derived cDNA Library described in
Reference 3 was plated on LB agar medium containing ampicillin (50
.mu.g/ml) to obtain colonies. The colonies were then transferred to and
fixed on Hybond-N+ nylon membrane (Amersham) according to the
manufacturer's protocol. DNA probe in which the insertion sequence of
clone 13 was labeled with .sup.32P was employed for hybridization and
autoradiography under similar conditions to those mentioned above in
order to select colonies representing positive transformants. Recombinant
plasmids were then recovered from the many colonies selected, treated
with restriction enzymes Not I and Sal I, and then electrophoresed on
agarose to determine the length of incorporated cDNAs. A recombinant
plasmid incorporating cDNA of about 3.8 kb was selected, and named clone
K. VA-13 Cells were then doubly transfected with the recombinant plasmid
clone K incorporating cDNA for the tumor antigen protein gene and another
recombinant plasmid containing cDNA for FILA-A2402 as described above,
and the cells were used as target cells. The amount of IFN-.gamma.
produced by the reaction of KE-4CTL was determined according to the
method as described above. The results are shown in Table 3.
TABLE-US-00003
TABLE 3
Amount of IFN-.gamma. produced
Target cell by KE-4CTL (pg/ml)
VA-13 + HLA-A2403 342
VA-13 + HLA-A2402 + clone K 627
[0142] When compared to VA-13 transfected with only HLA-A2402, KE-4CTL
reacted more strongly to VA-13 doubly transfected with HLA-A2402 and
clone K, and produced more IFN-.gamma.. This result indicated that the
protein encoded by clone K is a tumor antigen protein. The tumor antigen
protein encoded by clone K is named SART-3 (squamous cell carcinoma
antigens recognized by T cells-3).
EXAMPLE 3
Determination of Base Sequence of Tumor Antigen Protein Gene
[0143] The base sequence of the DNA of tumor antigen protein SART-3 as
obtained in Example 3 was determined using DyeDeoxy Terminator Cycle
Sequencing kit (Perkin-Elmer). The base sequence thus determined is shown
in SEQ ID NO: 1. The full-length of the cDNA was 3798 base pairs. Amino
acid sequence (963 amino acids) encoded by the base sequence of SEQ ID
NO: 1 is shown in SEQ ID NO: 2. Comparison of the base sequence shown in
SEQ ID NO: 1 to known sequences using GenBank data base revealed that the
base sequence of tumor antigen protein SART-3 has a novel base sequence
that is different from gene KIAA0156 registered at GenBank under
Accession No, D63879 in terms of a single base (at position 108 of
KIAA0156), which function has not been demonstrated.
EXAMPLE 4
Selection of Candidate Peptides
[0144] There are certain rules (motifs) in the sequences of antigen
peptides that should be bound and presented by HLA antigens. Regarding
the motif for HLA-A24, it is known that in the sequence of peptides
consisting of 8 to 11 amino acids, the amino acid at position 2 is
tyrosine, phenylalanine, methionine, or tryptophan, and the amino acid at
the C-terminus is phenylalanine, tryptophan, leucine, isoleucine, or
methionine (Immunogenetics, 41:178, 1995; J. Immunol., 152:3913, 1994; J
Immunol., 155:4307, 1994). According to the motifs, peptide portions
consisting of 8 to 11 peptides having the above motifs were selected from
the amino acid sequence of tumor antigen protein SART-3 shown in SEQ ID
NO: 2. Those examples of the selected peptides are shown in SEQ ID NOs:
3-24. These peptides were synthesized at Biologica Co, by the Fmoc
method.
[0145] Then, 1.8.times.10.sup.4 VA-13 cells were transfected with a
recombinant plasmid of HLA-A2402 cDNA by the Lipofectin method to express
HLA-A2402 according to the literature (J. Exp. Med., 187:277, 1998). To
these cells, various peptides having a binding motif for HLA-A24 that had
precedently synthesized were each added at 10 .mu.M over two hours in
order to pulse the cells. The cells were then cultured with
2.times.10.sup.4 KE-4CTLs for 18 hours, and the amount of IFN-.gamma.
produced by KE-4CTL in the culture supernatant was determined by the
ELISA method. The results of this determination are shown in Table 4,
which performed on seven peptides, that is, a peptide "109-118"
comprising the sequence from position 109 to position 118 (SEQ ID NO: 3),
a peptide "172-181" comprising the sequence from position 172 to position
181 (SEQ ID NO: 4), a peptide "284-292" comprising the sequence from
position 284 to position 292 (SEQ ID NO: 5), a peptide "315-323"
comprising the sequence from position 315 to position 323 (SEQ ID NO:
[0146] 6), a peptide "416-425" comprising the sequence from position 416
to position 425 (SEQ ID NO: 7), a peptide "426-434" comprising the
sequence from position 426 to position 434 (SEQ ID NO: 8), and a peptide
"448-456" comprising the sequence from position 448 to position 456 (SEQ
ID NO: 9), in the amino acid sequence of tumor antigen protein SART-3.
TABLE-US-00004
TABLE 4
Peptides IFN-.gamma. in the supernatant (pg/ml)
"109-118" 928
"172-181" 830
"284-292" 794
"315-323" 880
"416-425" 731
"426-434" 833
"448-456" 754
None 677
[0147] When compared to cells pulsed with no peptide, KE-4CTLs reacted
more strongly to cells pulsed with the peptides, and produced more
IFN-.gamma.. This result indicated that the seven peptides function as
tumor antigen peptides.
EXAMPLE 5
Synthesis of Tumor Antigen Peptides
[0148] The seven peptides described above were synthesized by the solid
phase method as shown below.
(1) Synthesis of SART-3 "109-118" Val-Tyr-Asp-Tyr-Asn-Cys-His-Val-Asp-Leu
(SEQ ID NO: 3)
[0149] Fmoc-Leu-Alko Resin (0.55 mmol/g, 100-200 mesh) was used as a
resin. Using 100 mg of this resin, the synthesis was started according to
Schedule 1 described below to couple the following residues in order:
Fmoc-Asp(OtBu)-OH, Fmoc-Val-OH, Fmoc-His(Boc)-OH, Fmoc-Cys(Trt)-OH,
Fmoc-Asn-OH, Fmoc-Tyr(tBu)-OH, Fmoc-Asp(OtBu)-OH, Fmoc-Tyr(tBu)-OH, and
Fmoc-Val-OH. After the coupling, the procedures were conducted up to Step
3 of Schedule 1 to obtain a peptide resin,
[0150] To this peptide resin, 2 ml of Reagent K (the solution of 5%
phenol, 5% thioanisole, 5% H.sub.2O, and 2.5% ethanedithiol in TFA) was
added and the mixture was allowed to react for 2.5 hours at room
temperature. While cooling with ice, 10 ml of diethyl ether was added to
the reaction, the mixture was stirred for 10 minutes, filtered, and
washed with 10 ml of diethyl ether. To the filter cake, 10 ml of aqueous
acetic acid was added, and the mixture was stirred for 30 minutes. The
resin was then filtered, and washed with 4 ml of aqueous acetic acid.
After lyophilizing the filtrate and the wash, the crude peptide obtained
was dissolved in aqueous acetic acid, and injected into a reverse phase
packing material, YMC-PACK ODS-A column (30.phi..times.250 mm) that had
been pre-equilibrated with 0.1% aqueous TFA. The column was washed with
0.1% aqueous TFA, and elution at a flow rate of 7 ml/min was then
conducted, while increasing the concentration of acetonitrile up to 25%
over 180 minutes. The eluate was monitored by A 220 nm. The fractions
containing the desired product were combined together and lyophilized to
obtain 31.0 mg of Val-Tyr-Asp-Tyr-Asn-Cys-His-Val-Asp-Leu (SEQ ID NO: 3).
[0151] The peptide obtained, Val-Tyr-Asp-Tyr-Asn-Cys-His-Val-Asp-Leu (SEQ
ID NO: 3), had a retention time of 19.3 minutes in an analysis using a
reverse phase packing material, YMC-PACK ODS-AM column
(4.6.phi..times.250 mm) eluted with a linear gradient of acetonitrile
concentration from 16 to 46% containing 0.1% TFA, and the results of
amino acid analysis (Cys being not detected) and mass spectrometry of the
product were consistent with the theoretical values.
Amino Acid Analysis
[0152] Hydrolysis: 1% phenol/6N aqueous hydrochloric acid, 110.degree.
C., 8 hours; [0153] Analysis method: the ninhydrin method; [0154] *
Reference amino acid; Theoretical values are indicated in parentheses:
[0155] Asx: 2.77 (3) [0156] Val: 1.70 (2) [0157] *Leu: 1.00 (1) [0158]
Tyr: 1.98 (2) [0159] His: 0.91 (1)
Mass Spectrum (FAB)
[0159] [0160] [M+H].sup.+: 1241
TABLE-US-00005
[0160] TABLE 5
Schedule 1
Duration (min) .times. the
Steps number of treatments
1. (washing) DMF 1.2 ml 1 .times. 2
2. (deprotection) 50% piperidine/DMF 12 .times. 1
3. (washing) DMF 1.2 ml 1 .times. 7
4. (coupling) each amino-protected amino 30 .times. 1
acid (5 equivalents)/NMP solution 0.9 ml,
DIC (5 equivalents)/NMP solution 0.3 ml
5. (washing) DMF 1.2 ml 1 .times. 2
6. (coupling) each amino-protected amino 30 .times. 1
acid (5 equivalents)/NMP solution 0.9 ml,
DIC (5 equivalents)/NMP solution 0.3 ml
7. (washing) DMF 1.2 ml 1 .times. 4
(2) Synthesis of SART-3 "172-181" Leu-Phe-Glu-Lys-Ala-Val-Lys-Asp-Tyr-Ile
(SEO ID NO: 4)
[0161] According to a similar manner to that described in above (1), using
100 mg of Fmoc-Ile-Alko Resin (0.41 mmol/g, 100-200 mesh),
Fmoc-Tyr(tBu)-OH, Fmoc-Asp(OtBu)-OH, Fmoc-Lys(Boc)-OH, Fmoc-Val-OH,
Fmoc-Ala-OH, Fmoc-Lys(Boc)-OH, Fmoc-Glu(OtBu)-OH, Fmoc-Phe-OH, and
Fmoc-Leu-OH were coupled in order, and the product was then deprotected.
The crude peptide obtained was dissolved in aqueous acetic acid and
injected into a reverse phase packing material YMC-PACK ODS-A column
(30.phi..times.250 mm) that has been pre-equilibrated with 0.1% aqueous
TFA. The column was washed with 0.1% aqueous TFA, and the elution at a
flow rate of 7 ml/min was then conducted, while increasing the
concentration of acetonitrile up to 30% over 300 minutes. The eluate was
monitored by A 220 nm. The fractions containing the desired product were
combined together and lyophilized to obtain 66.3 mg of
Leu-Phe-Glu-Lys-Ala-Val-Lys-Asp-Tyr-Ile (SEQ ID NO: 4).
[0162] The peptide obtained, Leu-Phe-Glu-Lys-Ala-Val-Lys-Asp-Tyr-Ile (SEQ
ID NO: 4), had a retention time of 23.8 minutes in an analysis using a
reverse phase packing material YMC-PACK ODS-AM column (4.6.phi..times.250
mm) eluted with a linear gradient of acetonitrile concentration from 12
to 42% containing 0.1% TFA, and the results of amino acid analysis and
mass spectrometry of the product were consistent with the theoretical
values.
Amino Acid Analysis
[0163] Hydrolysis; 1% phenol/6N aqueous hydrochloric acid, 110.degree.
C., 12 hours; [0164] Analysis method: the ninhydrin method; [0165] *
Reference amino acid; Theoretical values are indicated in parentheses:
[0166] Asx: 0.94 (1) [0167] Glx: 1.03 (1) [0168] Ala: 1.00 (1) [0169]
Val: 0.88 (1) [0170] Ile: 0.92 (1) [0171] *Leu: 1.00 (1) [0172] Tyr: 0.96
(1) [0173] Phe: 0.97 (1) [0174] Lys: 1.45 (2)
Mass Spectrum (FAB)
[0174] [0175] [M+H].sup.+: 1225
(3) Synthesis of SART-3 "284-292" Asn-Tyr-Asn-Lys-Ala-Leu-Gln-Gln-Leu (SEQ
ID NO: 5)
[0176] According to a similar manner to that described in above (1), using
100 mg of Fmoc-Leu-Alko Resin, Fmoc-Gln-OH, Fmoc-Gln-OH, Fmoc-Leu-OH,
Fmoc-Ala-OH, Fmoc-Lys(Boc)-OH, Fmoc-Asn-OH, Fmoc-Tyr(tBu)-OH, and
Fmoc-Asn-OH were coupled in order, and the product was then deprotected.
The crude peptide obtained was dissolved in aqueous acetic acid and
injected into a reverse phase packing material YMC-PACK ODS-A column
(30.phi..times.250 mm) that has been pre-equilibrated with 0.1% aqueous
TFA. The column was washed with 0.1% aqueous TFA, and the elution at a
flow rate of 7 ml/min was then conducted, while increasing the
concentration of acetonitrile up to 30% over 300 minutes. The eluate was
monitored by A 220 nm. The fractions containing the desired product were
combined together and lyophilized to obtain 25.0 mg of
Asn-Tyr-Asn-Lys-Ala-Leu-Gln-Gln-Leu (SEQ ID NO: 5). The peptide obtained,
Asn-Tyr-Asn-Lys-Ala-Leu-Gln-Gln-Leu (SEQ ID NO: 5), had a retention time
of 19.0 minutes in an analysis using a reverse phase packing material
YMC-PACK ODS-AM column (4.6.phi..times.250 mm) eluted with a linear
gradient of acetonitrile concentration from 12 to 42% containing 0.1%
TFA, and the results of amino acid analysis and mass spectrometry of the
product were consistent with the theoretical values.
Amino Acid Analysis
[0177] Hydrolysis: 1% phenol/6N aqueous hydrochloric acid, 110.degree.
C., 12 hours; [0178] Analysis method: the ninhydrin method; [0179] *
Reference amino acid; Theoretical values are indicated in parentheses:
[0180] Asx: 1.87 (2) [0181] Glx: 2.03 (2) [0182] Ala: 0.98 (1) [0183]
*Leu: 2.00 (2) [0184] Tyr: 0.99 (1) [0185] Lys: 0.97 (1)
Mass Spectrum (FAB)
[0185] [0186] [M+H].sup.+: 1091
(4) Synthesis of SART-3 "315-323" Ala-Tyr-Ile-Asp-Phe-Glu-Met-Lys-Ile (SEQ
ID NO: 6)
[0187] According to a similar manner to that described in above (1), using
100 mg of Fmoc-Ile-Alko Resin (0.62 mmol/g, 100-200 mesh),
Fmoc-Lys(Boe)-OH, Fmoc-Met-OH, Fmoc-Glu(OtBu)-OH, Fmoc-Phe-OH,
Fmoc-Asp(OtBu)-OH, Fmoc-Ile-OH, Fmoc-Tyr(tBu)-OH, and Fmoc-Ala-OH were
coupled in order, and the product was then deprotected. The crude peptide
obtained was dissolved in aqueous acetic acid and injected into a reverse
phase packing material YMC-PACK ODS-A column (30.phi..times.250 mm) that
has been pre-equilibrated with 0.1% aqueous TFA. The column was washed
with 0.1% aqueous TFA, and the elution at a flow rate of 7 ml/min was
then conducted, while increasing the concentration of acetonitrile up to
40% over 180 minutes. The eluate was monitored by A 220 nm. The fractions
containing the desired product were combined together and lyophilized to
obtain 15.4 mg of Ala-Tyr-Ile-Asp-Phe-Glu-Met-Lys-Ile (SEQ ID NO: 6).
[0188] The peptide obtained, Ala-Tyr-Ile-Asp-Phe-Glu-Met-Lys-Ile (SEQ ID
NO: 6), had a retention time of 19.6 minutes in an analysis using a
reverse phase packing material YMC-PACK ODS-AM column (4.6.phi..times.250
mm) eluted with a linear gradient of acetonitrile concentration from 21
to 51% containing 0.1% TFA, and the results of amino acid analysis (Met
being not detected) and mass spectrometry of the product were consistent
with the theoretical values.
Amino Acid Analysis
[0189] Hydrolysis: 1% phenol/6N aqueous hydrochloric acid, 110.degree.
C., 12 hours; [0190] Analysis method: the ninhydrin method; [0191] *
Reference amino acid; Theoretical values are indicated in parentheses:
[0192] Asx: 0.91 (1) [0193] Glx: 1.06 (1) [0194] Ala: 1.06 (1) [0195]
Ile: 1.69 (2) [0196] Tyr: 0.81 (1) [0197] *Phe: 100 (1) [0198] Lys: 0.87
(1)
Mass Spectrum (FAB)
[0198] [0199] [M+H].sup.+: 1130
(5) Synthesis of SART-3 "416-425" Asp-Tyr-Val-Glu-Ile-Trp-Gln-Ala-Tyr-Leu
(SEQ ID NO: 7)
[0200] According to a similar manner to that described in above (1), using
100 mg of Fmoc-Leu-Alko Resin, Fmoc-Tyr(tBu)-OH, Fmoc-Ala-OH,
Fmoc-Gln-OH, Fmoc-Trp(Boc)-OH, Fmoc-Ilc-OH, Fmoc-Glu(OtBu)-OH,
Fmoc-Val-OH, Fmoc-Tyr(tBu)-OH, and Fmoc-Asp(OtBu)-OH were coupled in
order, and the product was then deprotected. The crude peptide obtained
was dissolved in aqueous acetic acid and injected into a reverse phase
packing material YMC-PACK ODS-A column (30.phi..times.250 mm) that has
been pre-equilibrated with 0.1% aqueous TFA. The column was washed with
0.1% aqueous TFA, and the elution at a flow rate of 7 ml/min was then
conducted, while increasing the concentration of acetonitrile up to 35%
over 180 minutes. The eluate was monitored by A 220 nm. The fractions
containing the desired product were combined together and lyophilized to
obtain 18,9 mg of Asp-Tyr-Val-Glu-Ile-Trp-Gln-Ala-Tyr-Leu (SEQ ID NO: 7).
[0201] The peptide obtained, Asp-Tyr-Val-Glu-Ile-Trp-Gln-Ala-Tyr-Leu (SEQ
ID NO: 7), had a retention time of 20.5 minutes in an analysis using a
reverse phase packing material YMC-PACK ODS-AM column (4.6.phi..times.250
mm) eluted with a linear gradient of acetonitrile concentration from 25
to 55% containing 0.1% TFA, and the results of amino acid analysis (Tip
being not detected) and mass spectrometry of the product were consistent
with the theoretical values.
Amino Acid Analysis
[0202] Hydrolysis: 1% phenol/6N aqueous hydrochloric acid, 110.degree.
C., 10 hours; [0203] Analysis method: the ninhydrin method; [0204] *
Reference amino acid; Theoretical values are indicated in parentheses:
[0205] Asx: 1.00 (1) [0206] Glx: 2.09 (2) [0207] Ala: 1.04 (1) [0208]
Val: 0.89 (1) [0209] Ile: 0.86 (1) [0210] *Leu: 1.00 (1) [0211] Tyr: 1.95
(2)
Mass Spectrum (FAB)
[0211] [0212] [M+H].sup.+: 1300
(6) Synthesis of SART-3 "426-434" Asp-Tyr-Leu-Arg-Arg-Arg-Val-Asp-Phe (SEQ
ID NO: 8)
[0213] According to a similar manner to that described in above (1), using
100 mg of Fmoc-Phe-Alko Resin (0.72 mmol/g, 100-200 mesh),
Fmoc-Asp(OtBu)-OH, Fmoc-Val-OH, Fmoc-Arg(Pmc)-OH, Fmoc-Arg(Pmc)-OH,
Fmoc-Arg(Pmc)-OH, Fmoc-Leu-OH, Fmoc-Tyr(tBu)-OH, and Fmoc-Asp(OtBu)-OH
were coupled in order, and the product was then deprotected. The crude
peptide obtained was dissolved in aqueous acetic acid and injected into a
reverse phase packing material YMC-PACK ODS-A column (30.phi..times.250
mm) that has been pre-equilibrated with 0.1% aqueous TFA. The column was
washed with 0.1% aqueous TFA, and the elution at a flow rate of 7 ml/min
was then conducted, while increasing the concentration of acetonitrile up
to 25% over 240 minutes. The eluate was monitored by A 220 nm. The
fractions containing the desired product were combined together and
lyophilized to obtain 34.0 mg of Asp-Tyr-Leu-Arg-Arg-Arg-Val-Asp-Phe (SEQ
ID NO: 8).
[0214] The peptide obtained, Asp-Tyr-Leu-Arg-Arg-Arg-Val-Asp-Phe (SEQ ID
NO: 8), had a retention time of 20.1 minutes in an analysis using a
reverse phase packing material YMC-PACK ODS-AM column (4.6.phi..times.250
mm) eluted with a linear gradient of acetonitrile concentration from 12
to 42% containing 0.1% TFA, and the results of amino acid analysis and
mass spectrometry of the product were consistent with the theoretical
values.
Amino Acid Analysis
[0215] Hydrolysis: 1% phenol/6N aqueous hydrochloric acid, 110.degree.
C., 12 hours; [0216] Analysis method: the ninhydrin method; [0217] *
Reference amino acid; Theoretical values are indicated in parentheses:
[0218] Asx: 1.90 (2) [0219] Vat: 0.95 (1) [0220] *Leu: 1,00 (1) [0221]
Tyr: 1.00 (1) [0222] Phe: 0,99 (1) [0223] Arg: 2.93 (3)
Mass Spectrum (FAB)
[0223] [0224] [M+H].sup.+: 1239
(7) Synthesis of SART-3 "448-456" Ala-Phe-Thr-Arg-Ala-Leu-Glu-Tyr-Leu (SEQ
ID NO: 9)
[0225] According to a similar manner to that described in above (1), using
100 mg of Fmoc-Leu-Alko Resin, Fmoc-Tyr(tBu)-OH, Fmoc-Glu(OtBu)-OH,
Fmoc-Leu-OH, Fmoc-Ala-OH, Fmoc-Arg(Pme)-OH, Fmoc-Thr(tBu)-OH,
Fmoc-Phe-OH, and Fmoc-Ala-OH were coupled in order, and the product was
then deprotected. The crude peptide obtained was dissolved in aqueous
acetic acid and injected into a reverse phase packing material YMC-PACK
ODS-A column (30.phi..times.250 mm) that has been pre-equilibrated with
0.1% aqueous TFA. The column was washed with 0.1% aqueous TFA, and the
elution at a flow rate of 7 ml/min was then conducted, while increasing
the concentration of acetonitrile up to 30% over 240 minutes. The eluate
was monitored by A 220 nm. The fractions containing the desired product
were combined together and lyophilized to obtain 22.8 mg of
Ala-Phe-Thr-Arg-Ala-Leu-Glu-Tyr-Leu (SEQ ID NO: 9).
[0226] The peptide obtained, Ala-Phe-Thr-Arg-Ala-Leu-Glu-Tyr-Leu (SEQ ID
NO: 9), had a retention time of 18.1 minutes in an analysis using a
reverse phase packing material YMC-PACK ODS-AM column (4.6.phi..times.250
mm) eluted with a linear gradient of acetonitrile concentration from 20
to 50% containing 0.1% TFA, and the results of amino acid analysis and
mass spectrometry of the product were consistent with the theoretical
values.
Amino Acid Analysis
[0227] Hydrolysis: 1% phenol/6N aqueous hydrochloric acid, 110.degree.
C., 12 hours; [0228] Analysis method: the ninhydrin method; [0229] *
Reference amino acid; Theoretical values are indicated in parentheses:
[0230] Thr: 0.91 (1) [0231] Glx: 1.03 (1) [0232] Ala: 1.91 (2) [0233]
*Leu: 2.00 (2) [0234] Tyr: 1.00 (1) [0235] Phe: 0.97 (1) [0236] Arg: 0.97
(1)
Mass Spectrum (FAB)
[0236] [0237] [M+H].sup.+: 1083
EXAMPLE 6
[0238] CTL Induction from Peripheral Blood Lymphocytes by Tumor Antigen
Peptides and Derivatives Thereof
[0239] The peptides "109-118" (SEQ ID NO: 3) and "315-323" (SEQ ID NO: 6)
synthesized as shown in Example 5 were investigated for their ability to
induce antigen-specific CTLs from peripheral blood lymphocytes.
[0240] Using the Ficoll method, lymphocytes were separated from peripheral
blood of healthy donors who were heterozygous for A24 in the HLA-A locus
(referred to as HD1 and HD2, respectively). The lymphocytes were placed
into wells of a 24-well plate at 2.times.10.sup.6 cells/well, and
cultured in the lymphocyte medium. The above tumor antigen peptides were
added to the culture medium at 10 .mu.M to stimulate the peripheral blood
lymphocytes. After one week, the above tumor antigen peptide was added to
attain 10 .mu.M together with about 2.times.10.sup.5 cells of X-radiated
(50 Gy) peripheral blood lymphocytes for the second stimulation. After
additional one week, the third stimulation was conducted in a similar
manner. Cultured lymphocytes were harvested one week after the third
stimulation. Using as target cells (1.times.10.sup.4 cells) MT-2, which
is an HLA-A2402-positive leukemia T cell line expressing SART-3, and
RPMI8402, which is an HLA-A2402-negative leukemia T cell line expressing
SART-3, the amount of IFN-.gamma. in the culture medium produced by the
above lymphocytes (8.times.10.sup.4 cells) in response to the target
cells was measured in accordance with a similar ELISA method to that in
Example 1. The results are shown in Table 6.
TABLE-US-00006
TABLE 6
IFN-.gamma. in Supernatant (pg/ml)
Antigen HD1 HD2
Peptides MT-2 RPMI8402 MT-2 RPMI8402
"109-118" 1771 159 2078 28
"315-323" 2041 26 974 40
None 552 154 413 69
[0241] Peripheral blood lymphocytes stimulated with "109-118" and
"315-323" peptides reacted to MT-2 (HLA-A24-positive) but not to RPMI8402
(HLA-A24-negative), indicating that CTLs specific for tumor antigen
peptide were induced in a HLA-A24-restricted manner.
[0242] Likewise, a similar experiment can be conducted using COS-7 cells
(ATCC No. CRL1651) or VA-13 cells (RIKEN CELL BANK, The Institute of
Physical and Chemical Research) into which an expression plasmid for
HLA-A24 cDNA has been introduced and which have been pulsed with the
above peptides, instead of MT-2 used in the present experiment (J. Exp.
Med., 187:277, 1998).
EXAMPLE 7
[0243] Establishment of Cytotoxic T Lymphocytes (CTLs) Cell Line from
Tumor-Infiltrating Lymphocytes (TILs) Derived from Colon Cancer
[0244] TILs from a surgical sample taken from a patient with sigmoid colon
cancer (HLA-A0207-positive) were cultured on 24-well plate in a culture
medium consisting of 45% RPMI, 45% AIM-V (GIBCO BRL), and 10% FCS
supplemented with 100 U/ml interleukin-2 and 0.1 mM NEAA (GIBCO BRL)
(hereinafter referred to as lymphocyte medium). During the first two days
of the cultivation, an anti-CD3 antibody NU-T3 (Nichirei Corporation) was
added to the culture medium at 1 .mu.g/ml. The cultivation was continued
for more than 30 days, and a CTL line that is restricted to HLA-A2 was
established, the CTL line being named OK-CTL. OK-CTL was deposited at The
National Institute of Bioscience and Human Technology, Agency of
Industrial Science and Technology (1-1-3 Higashi, Tsukuba, Ibaraki,
Japan) (designation of microorganism: OK-CTL; deposition date: Aug. 3,
1999; deposit number: FERM BP-6818).
[0245] According to the description in Nakao et al., Cancer Res.,
55:4248-4252 (1995), recombinant plasmids were prepared from SW620 cells
(ATCC No. CCL-227), in which eDNAs for HLA-A0201 (GenBank Accession No.
M84379) was incorporated into an expression vector pCR3 (INVITROGEN).
Using, as target cells, transfectants that had been prepared by doubly
transfecting a cell line derived from African green monkey kidney, COS-7
(ATCC No. CRL1651) (1.times.10.sup.4 cells) with recombinant plasmid
clone K incorporated with the SART-3 gene cDNA, and with a recombinant
plasmid incorporated with HLA-A0201 cDNA using a Lipofectin method
similar to in Example 1, the amount of IFN-.sub.7 produced by
5.times.10.sup.4 OK-CTLs in response to the target cells was measured by
ELISA. As control groups, a non-treatment group wherein no plasmid was
transfected, and a group wherein recombinant plasmid clone K and the
recombinant plasmid incorporated with HLA-A2402 cDNA were doubly
transfected were designed. The result is shown in Table 7.
TABLE-US-00007
TABLE 7
Amount of IFN-.gamma. Produced
Target cells by OK-CTL (pg/ml)
COS-7 653
COS-7 + HLA-A0201 + K 2401
COS-7 + HLA-A2402 + K 600
[0246] OK-CTL reacted more strongly to the target cells doubly transfected
with recombinant plasmid clone K incorporated with SART-3 gene cDNA and
with the recombinant plasmid incorporated with HLA-A0201 cDNA, and
produced more IFN-.gamma., compared to other target cell groups. This
result indicates that the antigen peptides of tumor antigen protein
SART-3 is presented on HLA-A0201, and OK-CTL recognizes it, suggesting
that SART-3 contains HLA-A2-restricted tumor antigen peptides.
EXAMPLE 8
Identification of HLA-A2-Restricted Tumor Antigen Peptides
[0247] On the basis of the amino acid sequence of tumor antigen protein
SART-3 shown in SEQ ID NO:2, peptide sequences consisting of nine or ten
amino acid residues that were expected to be capable of binding to
HLA-A0201 were searched on the internet using the BIMAS software of NIH.
Those examples of the searched peptides are shown in SEQ ID NOs: 25-52.
These peptides were synthesized at Biologica Co. by the Fmoc method.
[0248] Then, 1.times.10.sup.4 T2 cells, T-B hybridoma cell line that is
HLA-A0201 positive and that lacks in an capability to present endogenous
peptides were pulsed with each of peptides expected to be capable of
binding to HLA-A0201 that had precedently synthesized at 10 .mu.M over
two hours. The cells were then cultured with 6.times.10.sup.4 OK-CTLs for
18 hours, and the amount of IFN-.gamma. produced by OK-CTL in the culture
supernatant was determined by ELISA. The results of this determination
are shown in Table 8, which performed on five peptides, that is, a
peptide "152-160" comprising the sequence from position 152 to position
160 (SEQ ID NO: 25), a peptide "249-257" comprising the sequence from
position 249 to position 257 (SEQ ID NO: 26), a peptide "302-310"
comprising the sequence from position 302 to position 310 (SEQ ID NO:
27), a peptide "309-317" comprising the sequence from position 309 to
position 317 (SEQ ID NO: 28), and a peptide "386-394" comprising the
sequence from position 386 to position 394 (SEQ ID NO: 29), in the amino
acid sequence of tumor antigen protein SART-3.
TABLE-US-00008
TABLE 8
Peptides IFN-.gamma. in the supernatant (pg/ml)*
"152-160" 162
"249-257" 209
"302-310" 190
"309-317" 231
"386-394" 122
*The values are those subtracted by the amount of produced IFN-.gamma. by
T2 cells pulsed with no peptide.
[0249] KE-4CTLs reacted more strongly to cells pulsed with the peptides,
and produced more IFN-.gamma., compared to cells pulsed with no peptide.
This result indicates that the five peptides function as
HLA-A2-restricted tumor antigen peptides.
[0250] Likewise, a similar experiment can be conducted using COS-7 cells
(ATCC No. CRL1651) or VA-13 cells (RIKEN CELL BANK, The Institute of
Physical and Chemical Research) into which an expression plasmid for
HLA-A0201 cDNA has been introduced instead of the T2 cells as used in the
present experiment (J. Exp. Med., 187:277, 1998).
SEQUENCE LISTING FREE TEXT
[0251] In the amino acid sequence shown in SEQ ID NO: 53, the second amino
acid is phenylalanine, tyrosine, methionine, or tryptophan, and the tenth
amino acid is phenylalanine, leucine, isoleucine, tryptophan, or
methionine.
[0252] In the amino acid sequence shown in SEQ ID NO: 54, the second amino
acid is phenylalanine, tyrosine, methionine, or tryptophan, and the tenth
amino acid is phenylalanine, leucine, isoleucine, tryptophan, or
methionine.
[0253] In the amino acid sequence shown in SEQ ID NO: 55, the second amino
acid is phenylalanine, tyrosine, methionine, or tryptophan, and the ninth
amino acid is phenylalanine, leucine, isoleucine, tryptophan, or
methionine.
[0254] In the amino acid sequence shown in SEQ ID NO: 56, the second amino
acid is phenylalanine, tyrosine, methionine, or tryptophan, and the ninth
amino acid is phenylalanine, leucine, isoleucine, tryptophan, or
methionine.
[0255] In the amino acid sequence shown in SEQ ID NO: 57, the second amino
acid is phenylalanine, tyrosine, methionine, or tryptophan, and the tenth
amino acid is phenylalanine, leucine, isoleucine, tryptophan, or
methionine.
[0256] In the amino acid sequence shown in SEQ ID NO: 58, the second amino
acid is phenylalanine, tyrosine, methionine, or tryptophan, and the ninth
amino acid is phenylalanine, leucine, isoleucine, tryptophan, or
methionine.
[0257] In the amino acid sequence shown in SEQ ID NO: 59, the second amino
acid is phenylalanine, tyrosine, methionine, or tryptophan, and the ninth
amino acid is phenylalanine, leucine, isoleucine, tryptophan, or
methionine.
[0258] In the amino acid sequence shown in SEQ ID NO: 60, the second amino
acid is leucine, methionine, valine, isoleucine, or glutamine, and the
ninth amino acid is valine, or leucine, In the amino acid sequence shown
in SEQ ID NO: 61, the second amino acid is leucine, methionine, valine,
isoleucine, or glutamine, and the ninth amino acid is valine, or leucine.
[0259] In the amino acid sequence shown in SEQ ID NO: 62, the second amino
acid is leucine, methionine, valine, isoleucine, or glutamine, and the
ninth amino acid is valine, or leucine.
[0260] In the amino acid sequence shown in SEQ ID NO: 63, the second amino
acid is leucine, methionine, valine, isoleucine, or glutamine, and the
ninth amino acid is valine, or leucine.
[0261] In the amino acid sequence shown in SEQ ID NO: 64, the second amino
acid is leucine, methionine, valine, isoleucine, or glutamine, and the
ninth amino acid is valine, or leucine.
INDUSTRIAL APPLICABILITY
[0262] According to the present invention, a novel tumor antigen protein
and gene therefor, tumor antigen peptides derived from said tumor antigen
protein, and derivatives thereof, as well as medicaments, prophylactics,
or diagnostics for tumors using such tumor antigen protein, gene, tumor
antigen peptides, or derivatives thereof in vivo or in vitro, can be
provided.
Sequence CWU
1
6413798DNAHomo sapiensCDS(12)..(2900) 1ccacgcgtcc g atg gcg act gcg gcc
gaa acc tcg gct tca gaa ccc gag 50 Met Ala Thr Ala Ala
Glu Thr Ser Ala Ser Glu Pro Glu 1 5
10gct gag tcc aag gct ggg ccc aag gct gac gga gag gag gat gag gtt
98Ala Glu Ser Lys Ala Gly Pro Lys Ala Asp Gly Glu Glu Asp Glu Val
15 20 25aag gcg gct agg aca agg aga aag
gtg tta tcg cgg gct gtg gcc gct 146Lys Ala Ala Arg Thr Arg Arg Lys
Val Leu Ser Arg Ala Val Ala Ala30 35 40
45gcg aca tac aag acc atg ggg cca gcg tgg gat cag cag
gag gaa ggc 194Ala Thr Tyr Lys Thr Met Gly Pro Ala Trp Asp Gln Gln
Glu Glu Gly 50 55 60gtg
agc gag agc gat ggg gat gag tac gcc atg gct tcc tcc gcg gag 242Val
Ser Glu Ser Asp Gly Asp Glu Tyr Ala Met Ala Ser Ser Ala Glu 65
70 75agc tcc ccc ggg gag tac gag tgg
gaa tat gac gaa gag gag gag aaa 290Ser Ser Pro Gly Glu Tyr Glu Trp
Glu Tyr Asp Glu Glu Glu Glu Lys 80 85
90aac cag ctg gag att gag aga ctg gag gag cag ttg tct atc aac gtc
338Asn Gln Leu Glu Ile Glu Arg Leu Glu Glu Gln Leu Ser Ile Asn Val
95 100 105tat gac tac aac tgc cat gtg
gac ttg atc aga ctg ctc agg ctg gaa 386Tyr Asp Tyr Asn Cys His Val
Asp Leu Ile Arg Leu Leu Arg Leu Glu110 115
120 125ggg gag ctt acc aag gtg agg atg gcc cgc cag aag
atg agt gaa atc 434Gly Glu Leu Thr Lys Val Arg Met Ala Arg Gln Lys
Met Ser Glu Ile 130 135
140ttt ccc ttg act gaa gag ctc tgg ctg gag tgg ctg cat gac gag atc
482Phe Pro Leu Thr Glu Glu Leu Trp Leu Glu Trp Leu His Asp Glu Ile
145 150 155agc atg gcc cag gat ggc
ctg gac aga gag cac gtg tat gac ctc ttt 530Ser Met Ala Gln Asp Gly
Leu Asp Arg Glu His Val Tyr Asp Leu Phe 160 165
170gag aaa gcc gtg aag gat tac att tgt cct aac att tgg cta
gag tat 578Glu Lys Ala Val Lys Asp Tyr Ile Cys Pro Asn Ile Trp Leu
Glu Tyr 175 180 185ggc cag tac tca gtt
ggt ggg att ggt cag aaa ggt ggc ctt gag aaa 626Gly Gln Tyr Ser Val
Gly Gly Ile Gly Gln Lys Gly Gly Leu Glu Lys190 195
200 205gtt cgc tcc gtg ttt gaa agg gct ctc tcg
tct gtt ggt tta cat atg 674Val Arg Ser Val Phe Glu Arg Ala Leu Ser
Ser Val Gly Leu His Met 210 215
220acc aaa gga ctc gcc ctc tgg gag gct tac cga gag ttt gaa agt gcg
722Thr Lys Gly Leu Ala Leu Trp Glu Ala Tyr Arg Glu Phe Glu Ser Ala
225 230 235att gtg gaa gct gct cgg
ctt gag aaa gtc cac agt ctt ttc cgg cga 770Ile Val Glu Ala Ala Arg
Leu Glu Lys Val His Ser Leu Phe Arg Arg 240 245
250cag ttg gcg atc cca ctc tat gat atg gag gcc aca ttt gca
gag tat 818Gln Leu Ala Ile Pro Leu Tyr Asp Met Glu Ala Thr Phe Ala
Glu Tyr 255 260 265gaa gaa tgg tca gaa
gac cca ata cca gag tca gta att cag aac tat 866Glu Glu Trp Ser Glu
Asp Pro Ile Pro Glu Ser Val Ile Gln Asn Tyr270 275
280 285aac aaa gca cta cag cag ctg gag aaa tat
aaa ccc tat gaa gaa gca 914Asn Lys Ala Leu Gln Gln Leu Glu Lys Tyr
Lys Pro Tyr Glu Glu Ala 290 295
300ctg ttg cag gca gag gca cca agg ctg gca gaa tat caa gca tat atc
962Leu Leu Gln Ala Glu Ala Pro Arg Leu Ala Glu Tyr Gln Ala Tyr Ile
305 310 315gat ttt gag atg aaa att
ggc gat cct gct cgc att cag ttg atc ttt 1010Asp Phe Glu Met Lys Ile
Gly Asp Pro Ala Arg Ile Gln Leu Ile Phe 320 325
330gag cgc gcc ctg gtc gag aac tgc ctt gtc cca gac tta tgg
atc cgt 1058Glu Arg Ala Leu Val Glu Asn Cys Leu Val Pro Asp Leu Trp
Ile Arg 335 340 345tac agt cag tac cta
gat cga caa ctg aaa gta aag gat ttg gtt tta 1106Tyr Ser Gln Tyr Leu
Asp Arg Gln Leu Lys Val Lys Asp Leu Val Leu350 355
360 365tct gta cat aac cgc gct att aga aac tgc
ccc tgg aca gtt gcc tta 1154Ser Val His Asn Arg Ala Ile Arg Asn Cys
Pro Trp Thr Val Ala Leu 370 375
380tgg agt cgg tac ctc ttg gcc atg gag aga cat gga gtt gat cat caa
1202Trp Ser Arg Tyr Leu Leu Ala Met Glu Arg His Gly Val Asp His Gln
385 390 395gta att tct gta acc ttc
gag aaa gct ttg aat gcc ggc ttc atc cag 1250Val Ile Ser Val Thr Phe
Glu Lys Ala Leu Asn Ala Gly Phe Ile Gln 400 405
410gcc act gat tat gtg gag att tgg cag gca tac ctt gat tac
ctg agg 1298Ala Thr Asp Tyr Val Glu Ile Trp Gln Ala Tyr Leu Asp Tyr
Leu Arg 415 420 425aga agg gtt gat ttc
aaa caa gac tcc agt aaa gag ctg gag gag ttg 1346Arg Arg Val Asp Phe
Lys Gln Asp Ser Ser Lys Glu Leu Glu Glu Leu430 435
440 445agg gcc gcc ttt act cgt gcc ttg gag tat
ctg aag cag gag gtg gaa 1394Arg Ala Ala Phe Thr Arg Ala Leu Glu Tyr
Leu Lys Gln Glu Val Glu 450 455
460gag cgt ttc aat gag agt ggt gat cca agc tgc gtg att atg cag aac
1442Glu Arg Phe Asn Glu Ser Gly Asp Pro Ser Cys Val Ile Met Gln Asn
465 470 475tgg gct agg att gag gct
cga ctg tgc aat aac atg cag aaa gct cgg 1490Trp Ala Arg Ile Glu Ala
Arg Leu Cys Asn Asn Met Gln Lys Ala Arg 480 485
490gaa ctc tgg gat agc atc atg acc aga gga aat gcc aag tac
gcc aac 1538Glu Leu Trp Asp Ser Ile Met Thr Arg Gly Asn Ala Lys Tyr
Ala Asn 495 500 505atg tgg cta gag tat
tac aac ctg gaa aga gct cat ggt gac acc cag 1586Met Trp Leu Glu Tyr
Tyr Asn Leu Glu Arg Ala His Gly Asp Thr Gln510 515
520 525cac tgc cgg aag gct ctg cac cgg gcc gtc
cag tgc acc agt gac tac 1634His Cys Arg Lys Ala Leu His Arg Ala Val
Gln Cys Thr Ser Asp Tyr 530 535
540cca gag cac gtc tgc gaa gtg tta ctc acc atg gag agg aca gaa ggt
1682Pro Glu His Val Cys Glu Val Leu Leu Thr Met Glu Arg Thr Glu Gly
545 550 555tct tta gaa gat tgg gat
ata gct gtt cag aaa act gaa acc cga tta 1730Ser Leu Glu Asp Trp Asp
Ile Ala Val Gln Lys Thr Glu Thr Arg Leu 560 565
570gct cgt gtc aat gag cag aga atg aag gct gca gag aag gaa
gca gcc 1778Ala Arg Val Asn Glu Gln Arg Met Lys Ala Ala Glu Lys Glu
Ala Ala 575 580 585ctt gtg cag caa gaa
gaa gaa aag gct gaa caa cgg aaa aga gct cgg 1826Leu Val Gln Gln Glu
Glu Glu Lys Ala Glu Gln Arg Lys Arg Ala Arg590 595
600 605gct gag aag aaa gcg tta aaa aag aag aaa
aag atc aga ggc cca gag 1874Ala Glu Lys Lys Ala Leu Lys Lys Lys Lys
Lys Ile Arg Gly Pro Glu 610 615
620aag cgc gga gca gat gag gac gat gag aaa gag tgg ggc gat gat gaa
1922Lys Arg Gly Ala Asp Glu Asp Asp Glu Lys Glu Trp Gly Asp Asp Glu
625 630 635gaa gag cag cct tcc aaa
cgc aga agg gtc gag aac agc atc cct gca 1970Glu Glu Gln Pro Ser Lys
Arg Arg Arg Val Glu Asn Ser Ile Pro Ala 640 645
650gct gga gaa aca caa aat gta gaa gta gca gca ggg ccc gct
ggg aaa 2018Ala Gly Glu Thr Gln Asn Val Glu Val Ala Ala Gly Pro Ala
Gly Lys 655 660 665tgt gct gcc gta gat
gtg gag ccc cct tcg aag cag aag gag aag gca 2066Cys Ala Ala Val Asp
Val Glu Pro Pro Ser Lys Gln Lys Glu Lys Ala670 675
680 685gcc tcc ctg aag agg gac atg ccc aag gtg
ctg cac gac agc agc aag 2114Ala Ser Leu Lys Arg Asp Met Pro Lys Val
Leu His Asp Ser Ser Lys 690 695
700gac agc atc acc gtc ttt gtc agc aac ctg ccc tac agc atg cag gag
2162Asp Ser Ile Thr Val Phe Val Ser Asn Leu Pro Tyr Ser Met Gln Glu
705 710 715ccg gac acg aag ctc agg
cca ctc ttc gag gcc tgt ggg gag gtg gtc 2210Pro Asp Thr Lys Leu Arg
Pro Leu Phe Glu Ala Cys Gly Glu Val Val 720 725
730cag atc cga ccc atc ttc agc aac cgt ggg gat ttc cga ggt
tac tgc 2258Gln Ile Arg Pro Ile Phe Ser Asn Arg Gly Asp Phe Arg Gly
Tyr Cys 735 740 745tac gtg gag ttt aaa
gaa gag aaa tca gcc ctt cag gca ctg gag atg 2306Tyr Val Glu Phe Lys
Glu Glu Lys Ser Ala Leu Gln Ala Leu Glu Met750 755
760 765gac cgg aaa agt gta gaa ggg agg cca atg
ttt gtt tcc ccc tgt gtg 2354Asp Arg Lys Ser Val Glu Gly Arg Pro Met
Phe Val Ser Pro Cys Val 770 775
780gat aag agc aaa aac ccc gat ttt aag gtg ttc agg tac agc act tcc
2402Asp Lys Ser Lys Asn Pro Asp Phe Lys Val Phe Arg Tyr Ser Thr Ser
785 790 795cta gag aaa cac aag ctg
ttc atc tca ggc ctg cct ttc tcc tgt act 2450Leu Glu Lys His Lys Leu
Phe Ile Ser Gly Leu Pro Phe Ser Cys Thr 800 805
810aaa gag gaa cta gaa gaa atc tgt aag gct cat ggc acc gtg
aag gac 2498Lys Glu Glu Leu Glu Glu Ile Cys Lys Ala His Gly Thr Val
Lys Asp 815 820 825ctc agg ctg gtc acc
aac cgg gct ggc aaa cca aag ggc ctg gcc tac 2546Leu Arg Leu Val Thr
Asn Arg Ala Gly Lys Pro Lys Gly Leu Ala Tyr830 835
840 845gtg gag tat gaa aat gaa tcc cag gcg tcg
cag gct gtg atg aag atg 2594Val Glu Tyr Glu Asn Glu Ser Gln Ala Ser
Gln Ala Val Met Lys Met 850 855
860gac ggc atg act atc aaa gag aac atc atc aaa gtg gca atc agc aac
2642Asp Gly Met Thr Ile Lys Glu Asn Ile Ile Lys Val Ala Ile Ser Asn
865 870 875cct cct cag agg aaa gtt
cca gag aag cca gag acc agg aag gca cca 2690Pro Pro Gln Arg Lys Val
Pro Glu Lys Pro Glu Thr Arg Lys Ala Pro 880 885
890ggt ggc ccc atg ctt ttg ccg cag aca tac gga gcg agg ggg
aag gga 2738Gly Gly Pro Met Leu Leu Pro Gln Thr Tyr Gly Ala Arg Gly
Lys Gly 895 900 905agg acg cag ctg tct
cta ctg cct cgt gcc ctg cag cgc cca agt gct 2786Arg Thr Gln Leu Ser
Leu Leu Pro Arg Ala Leu Gln Arg Pro Ser Ala910 915
920 925gca gct cct cag gct gag aac ggc cct gcc
gcg gct cct gca gtt gcc 2834Ala Ala Pro Gln Ala Glu Asn Gly Pro Ala
Ala Ala Pro Ala Val Ala 930 935
940gcc cca gca gcc acc gag gca ccc aag atg tcc aat gcc gat ttt gcc
2882Ala Pro Ala Ala Thr Glu Ala Pro Lys Met Ser Asn Ala Asp Phe Ala
945 950 955aag ctg ttt ctg aga aag
tgaacgggac gctgggagac aggaaatgcc 2930Lys Leu Phe Leu Arg Lys
960ttacttcact ctggcccggc ggacctccca ccacccagca gtgcactggg gatggacagg
2990cctggtgtgc tgcgtgctcg caaccacaga tggctcctcg gctttagaca gaaaggggaa
3050ggggttctaa gtcaagagcc tttcagtgct ccctcatatt gagggcagtg gcagaaaagt
3110gaccactctg caggctgggc ccaggatgtg gtgtcctgag atagttttgt atcttaaaga
3170ctgaggcaca gaagcgaaac gagaacacac tgtttttgag acacagttgt ccaaatgttt
3230ctggccagct ccggcccctt tttgtatgac acttctcttc caccctgcac agcacatgtg
3290cccgtcattc ttttaatttt aaaagatgaa atggcagatg ctagtaattc acagaatggc
3350ctcttgtggg ggtgggtctg agggaagtca gctataaaac atttgctgga gttttgttca
3410atggggctgt gcatttttat attatgtgtt tgtaaatgac atgtcagccc ttgtttcatg
3470tttcctaaaa gcagaatatt tgcaacattt gttttgtata ggaattattt gtgccacctg
3530ctgtggactg ttttctttgc ctagtgacta gtgacctgtg ttgtctaaac atgagtttca
3590gccctttggt tttgtttaat accatgtcaa atgcaaactt caattctccc catttagctt
3650tattaaactg acgttctctt caaaacttct tgctgaatgg tactcagatg tgcattcaca
3710tacagatgtg ttttgaagtg ggtgtacctt gctttaccta atagatgtgt aaatagaact
3770tttgtaagtc aaaaaaaaaa aaaaaaaa
37982963PRTHomo sapiens 2Met Ala Thr Ala Ala Glu Thr Ser Ala Ser Glu Pro
Glu Ala Glu Ser1 5 10
15Lys Ala Gly Pro Lys Ala Asp Gly Glu Glu Asp Glu Val Lys Ala Ala
20 25 30Arg Thr Arg Arg Lys Val Leu
Ser Arg Ala Val Ala Ala Ala Thr Tyr 35 40
45Lys Thr Met Gly Pro Ala Trp Asp Gln Gln Glu Glu Gly Val Ser
Glu 50 55 60Ser Asp Gly Asp Glu Tyr
Ala Met Ala Ser Ser Ala Glu Ser Ser Pro65 70
75 80Gly Glu Tyr Glu Trp Glu Tyr Asp Glu Glu Glu
Glu Lys Asn Gln Leu 85 90
95Glu Ile Glu Arg Leu Glu Glu Gln Leu Ser Ile Asn Val Tyr Asp Tyr
100 105 110Asn Cys His Val Asp Leu
Ile Arg Leu Leu Arg Leu Glu Gly Glu Leu 115 120
125Thr Lys Val Arg Met Ala Arg Gln Lys Met Ser Glu Ile Phe
Pro Leu 130 135 140Thr Glu Glu Leu Trp
Leu Glu Trp Leu His Asp Glu Ile Ser Met Ala145 150
155 160Gln Asp Gly Leu Asp Arg Glu His Val Tyr
Asp Leu Phe Glu Lys Ala 165 170
175Val Lys Asp Tyr Ile Cys Pro Asn Ile Trp Leu Glu Tyr Gly Gln Tyr
180 185 190Ser Val Gly Gly Ile
Gly Gln Lys Gly Gly Leu Glu Lys Val Arg Ser 195
200 205Val Phe Glu Arg Ala Leu Ser Ser Val Gly Leu His
Met Thr Lys Gly 210 215 220Leu Ala Leu
Trp Glu Ala Tyr Arg Glu Phe Glu Ser Ala Ile Val Glu225
230 235 240Ala Ala Arg Leu Glu Lys Val
His Ser Leu Phe Arg Arg Gln Leu Ala 245
250 255Ile Pro Leu Tyr Asp Met Glu Ala Thr Phe Ala Glu
Tyr Glu Glu Trp 260 265 270Ser
Glu Asp Pro Ile Pro Glu Ser Val Ile Gln Asn Tyr Asn Lys Ala 275
280 285Leu Gln Gln Leu Glu Lys Tyr Lys Pro
Tyr Glu Glu Ala Leu Leu Gln 290 295
300Ala Glu Ala Pro Arg Leu Ala Glu Tyr Gln Ala Tyr Ile Asp Phe Glu305
310 315 320Met Lys Ile Gly
Asp Pro Ala Arg Ile Gln Leu Ile Phe Glu Arg Ala 325
330 335Leu Val Glu Asn Cys Leu Val Pro Asp Leu
Trp Ile Arg Tyr Ser Gln 340 345
350Tyr Leu Asp Arg Gln Leu Lys Val Lys Asp Leu Val Leu Ser Val His
355 360 365Asn Arg Ala Ile Arg Asn Cys
Pro Trp Thr Val Ala Leu Trp Ser Arg 370 375
380Tyr Leu Leu Ala Met Glu Arg His Gly Val Asp His Gln Val Ile
Ser385 390 395 400Val Thr
Phe Glu Lys Ala Leu Asn Ala Gly Phe Ile Gln Ala Thr Asp
405 410 415Tyr Val Glu Ile Trp Gln Ala
Tyr Leu Asp Tyr Leu Arg Arg Arg Val 420 425
430Asp Phe Lys Gln Asp Ser Ser Lys Glu Leu Glu Glu Leu Arg
Ala Ala 435 440 445Phe Thr Arg Ala
Leu Glu Tyr Leu Lys Gln Glu Val Glu Glu Arg Phe 450
455 460Asn Glu Ser Gly Asp Pro Ser Cys Val Ile Met Gln
Asn Trp Ala Arg465 470 475
480Ile Glu Ala Arg Leu Cys Asn Asn Met Gln Lys Ala Arg Glu Leu Trp
485 490 495Asp Ser Ile Met Thr
Arg Gly Asn Ala Lys Tyr Ala Asn Met Trp Leu 500
505 510Glu Tyr Tyr Asn Leu Glu Arg Ala His Gly Asp Thr
Gln His Cys Arg 515 520 525Lys Ala
Leu His Arg Ala Val Gln Cys Thr Ser Asp Tyr Pro Glu His 530
535 540Val Cys Glu Val Leu Leu Thr Met Glu Arg Thr
Glu Gly Ser Leu Glu545 550 555
560Asp Trp Asp Ile Ala Val Gln Lys Thr Glu Thr Arg Leu Ala Arg Val
565 570 575Asn Glu Gln Arg
Met Lys Ala Ala Glu Lys Glu Ala Ala Leu Val Gln 580
585 590Gln Glu Glu Glu Lys Ala Glu Gln Arg Lys Arg
Ala Arg Ala Glu Lys 595 600 605Lys
Ala Leu Lys Lys Lys Lys Lys Ile Arg Gly Pro Glu Lys Arg Gly 610
615 620Ala Asp Glu Asp Asp Glu Lys Glu Trp Gly
Asp Asp Glu Glu Glu Gln625 630 635
640Pro Ser Lys Arg Arg Arg Val Glu Asn Ser Ile Pro Ala Ala Gly
Glu 645 650 655Thr Gln Asn
Val Glu Val Ala Ala Gly Pro Ala Gly Lys Cys Ala Ala 660
665 670Val Asp Val Glu Pro Pro Ser Lys Gln Lys
Glu Lys Ala Ala Ser Leu 675 680
685Lys Arg Asp Met Pro Lys Val Leu His Asp Ser Ser Lys Asp Ser Ile 690
695 700Thr Val Phe Val Ser Asn Leu Pro
Tyr Ser Met Gln Glu Pro Asp Thr705 710
715 720Lys Leu Arg Pro Leu Phe Glu Ala Cys Gly Glu Val
Val Gln Ile Arg 725 730
735Pro Ile Phe Ser Asn Arg Gly Asp Phe Arg Gly Tyr Cys Tyr Val Glu
740 745 750Phe Lys Glu Glu Lys Ser
Ala Leu Gln Ala Leu Glu Met Asp Arg Lys 755 760
765Ser Val Glu Gly Arg Pro Met Phe Val Ser Pro Cys Val Asp
Lys Ser 770 775 780Lys Asn Pro Asp Phe
Lys Val Phe Arg Tyr Ser Thr Ser Leu Glu Lys785 790
795 800His Lys Leu Phe Ile Ser Gly Leu Pro Phe
Ser Cys Thr Lys Glu Glu 805 810
815Leu Glu Glu Ile Cys Lys Ala His Gly Thr Val Lys Asp Leu Arg Leu
820 825 830Val Thr Asn Arg Ala
Gly Lys Pro Lys Gly Leu Ala Tyr Val Glu Tyr 835
840 845Glu Asn Glu Ser Gln Ala Ser Gln Ala Val Met Lys
Met Asp Gly Met 850 855 860Thr Ile Lys
Glu Asn Ile Ile Lys Val Ala Ile Ser Asn Pro Pro Gln865
870 875 880Arg Lys Val Pro Glu Lys Pro
Glu Thr Arg Lys Ala Pro Gly Gly Pro 885
890 895Met Leu Leu Pro Gln Thr Tyr Gly Ala Arg Gly Lys
Gly Arg Thr Gln 900 905 910Leu
Ser Leu Leu Pro Arg Ala Leu Gln Arg Pro Ser Ala Ala Ala Pro 915
920 925Gln Ala Glu Asn Gly Pro Ala Ala Ala
Pro Ala Val Ala Ala Pro Ala 930 935
940Ala Thr Glu Ala Pro Lys Met Ser Asn Ala Asp Phe Ala Lys Leu Phe945
950 955 960Leu Arg
Lys310PRTHomo sapiens 3Val Tyr Asp Tyr Asn Cys His Val Asp Leu1
5 10410PRTHomo sapiens 4Leu Phe Glu Lys Ala Val Lys
Asp Tyr Ile1 5 1059PRTHomo sapiens 5Asn
Tyr Asn Lys Ala Leu Gln Gln Leu1 569PRTHomo sapiens 6Ala
Tyr Ile Asp Phe Glu Met Lys Ile1 5710PRTHomo sapiens 7Asp
Tyr Val Glu Ile Trp Gln Ala Tyr Leu1 5
1089PRTHomo sapiens 8Asp Tyr Leu Arg Arg Arg Val Asp Phe1
599PRTHomo sapiens 9Ala Phe Thr Arg Ala Leu Glu Tyr Leu1
5109PRTHomo sapiens 10Asp Tyr Asn Cys His Val Asp Leu Ile1
51110PRTHomo sapiens 11Ile Phe Pro Leu Thr Glu Glu Leu Trp Leu1
5 10129PRTHomo sapiens 12Asp Tyr Ile Cys Pro Asn
Ile Trp Leu1 51310PRTHomo sapiens 13Glu Tyr Gly Gln Tyr Ser
Val Gly Gly Ile1 5 10149PRTHomo sapiens
14Ala Tyr Arg Glu Phe Glu Ser Ala Ile1 51510PRTHomo sapiens
15Leu Phe Arg Arg Gln Leu Ala Ile Pro Leu1 5
101610PRTHomo sapiens 16Glu Tyr Glu Glu Trp Ser Glu Asp Pro Ile1
5 10179PRTHomo sapiens 17Lys Tyr Lys Pro Tyr
Glu Glu Ala Leu1 51810PRTHomo sapiens 18Arg Tyr Ser Gln Tyr
Leu Asp Arg Gln Leu1 5 101910PRTHomo
sapiens 19Thr Phe Glu Lys Ala Leu Asn Ala Gly Phe1 5
102010PRTHomo sapiens 20Asp Phe Lys Gln Asp Ser Ser Lys Glu
Leu1 5 102110PRTHomo sapiens 21Asp Tyr
Pro Glu His Val Cys Glu Val Leu1 5
102210PRTHomo sapiens 22Asp Phe Arg Gly Tyr Cys Tyr Val Glu Phe1
5 10239PRTHomo sapiens 23Glu Phe Lys Glu Glu Lys
Ser Ala Leu1 5249PRTHomo sapiens 24Pro Phe Ser Cys Thr Lys
Glu Glu Leu1 5259PRTHomo sapiens 25Trp Leu His Asp Glu Ile
Ser Met Ala1 5269PRTHomo sapiens 26Ser Leu Phe Arg Arg Gln
Leu Ala Ile1 5279PRTHomo sapiens 27Leu Leu Gln Ala Glu Ala
Pro Arg Leu1 5289PRTHomo sapiens 28Arg Leu Ala Glu Tyr Gln
Ala Tyr Ile1 5299PRTHomo sapiens 29Leu Leu Ala Met Glu Arg
His Gly Val1 5309PRTHomo sapiens 30Asn Val Tyr Asp Tyr Asn
Cys His Val1 5319PRTHomo sapiens 31Lys Met Ser Glu Ile Phe
Pro Leu Thr1 5329PRTHomo sapiens 32Trp Leu Glu Tyr Gly Gln
Tyr Ser Val1 53310PRTHomo sapiens 33Ser Val Phe Glu Arg Ala
Leu Ser Ser Val1 5 103410PRTHomo sapiens
34Ala Leu Leu Gln Ala Glu Ala Pro Arg Leu1 5
103510PRTHomo sapiens 35Lys Ile Gly Asp Pro Ala Arg Ile Gln Leu1
5 103610PRTHomo sapiens 36Ile Gln Leu Ile Phe
Glu Arg Ala Leu Val1 5 10379PRTHomo
sapiens 37Gln Leu Ile Phe Glu Arg Ala Leu Val1 53810PRTHomo
sapiens 38Asp Leu Trp Ile Arg Tyr Ser Gln Tyr Leu1 5
10399PRTHomo sapiens 39Ala Leu Trp Ser Arg Tyr Leu Leu Ala1
54010PRTHomo sapiens 40Ala Leu Trp Ser Arg Tyr Leu Leu Ala
Met1 5 104110PRTHomo sapiens 41Tyr Leu
Leu Ala Met Glu Arg His Gly Val1 5
104210PRTHomo sapiens 42Ala Leu Asn Ala Gly Phe Ile Gln Ala Thr1
5 10439PRTHomo sapiens 43Tyr Leu Asp Tyr Leu Arg
Arg Arg Val1 54410PRTHomo sapiens 44Ile Met Thr Arg Gly Asn
Ala Lys Tyr Ala1 5 10459PRTHomo sapiens
45Asn Met Trp Leu Glu Tyr Tyr Asn Leu1 54610PRTHomo sapiens
46Val Leu His Asp Ser Ser Lys Asp Ser Ile1 5
10479PRTHomo sapiens 47Ser Ile Thr Val Phe Val Ser Asn Leu1
5489PRTHomo sapiens 48Ser Met Gln Glu Pro Asp Thr Lys Leu1
54910PRTHomo sapiens 49Lys Ser Val Glu Gly Arg Pro Met Phe Val1
5 10509PRTHomo sapiens 50Lys Val Phe Arg Tyr Ser
Thr Ser Leu1 5519PRTHomo sapiens 51Met Leu Leu Pro Gln Thr
Tyr Gly Ala1 55210PRTHomo sapiens 52Lys Met Ser Asn Ala Asp
Phe Ala Lys Leu1 5 105310PRTArtificial
SequenceVariant of SEQ ID NO3 53Val Xaa Asp Tyr Asn Cys His Val Asp Xaa1
5 105410PRTArtificial SequenceVariant of
SEQ ID NO4 54Leu Xaa Glu Lys Ala Val Lys Asp Tyr Xaa1 5
10559PRTArtificial SequenceVariant of SEQ ID NO 5 55Asn Xaa
Asn Lys Ala Leu Gln Gln Xaa1 5569PRTArtificial
SequenceVariant of SEQ ID NO 6 56Ala Xaa Ile Asp Phe Glu Met Lys Xaa1
55710PRTArtificial SequenceVariant of SEQ ID NO 7 57Asp Xaa Val
Glu Ile Trp Gln Ala Tyr Xaa1 5
10589PRTArtificial SequenceVariant of SEQ ID NO 8 58Asp Xaa Leu Arg Arg
Arg Val Asp Xaa1 5599PRTArtificial SequenceVariant of SEQ
ID NO 9 59Ala Xaa Thr Arg Ala Leu Glu Tyr Xaa1
5609PRTArtificial SequenceVariant of SEQ ID NO 25 60Trp Xaa His Asp Glu
Ile Ser Met Xaa1 5619PRTArtificial SequenceVariant of SEQ
ID NO 26 61Ser Xaa Phe Arg Arg Gln Leu Ala Xaa1
5629PRTArtificial SequenceVariant of SEQ ID NO 27 62Leu Xaa Gln Ala Glu
Ala Pro Arg Xaa1 5639PRTArtificial SequenceVariant of SEQ
ID NO 28 63Arg Xaa Ala Glu Tyr Gln Ala Tyr Xaa1
5649PRTArtificial SequenceVariant of SEQ ID NO 29 64Leu Xaa Ala Met Glu
Arg His Gly Xaa1 5
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