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| United States Patent Application |
20110306515
|
| Kind Code
|
A1
|
|
Soutschek; Erwin
|
December 15, 2011
|
DEVICE FOR SEROLOGICALLY DETECTING YERSINIA INFECTIONS AND/OR SECONDARY
DISEASES THEREOF AND USE OF THE PROTEINS MyfA AND PsaA OF Y.
ENTEROCOLITICA AND Y. PSEUDOTUBERCULOSIS AS RECOMBINANT ANTIGENS
Abstract
Devices are disclosed for serologically detecting an infection with
human-pathogenic Yersinia ssp, wherein said device comprises at least one
antigen selected from the group of antigens consisting of the following
group: YopD, YopH, YopM, YopE, V-AG and YopN or a fragment of one of said
antigens having at least eight consecutive amino acids and furthermore
one of two proteins selected from MyfA and PsaA or fragments of one of
said two proteins having at least eight consecutive amino acids.
| Inventors: |
Soutschek; Erwin; (Berg, DE)
|
| Assignee: |
MIKROGEN GmbH
Neuried
DE
|
| Serial No.:
|
148439 |
| Series Code:
|
13
|
| Filed:
|
February 11, 2010 |
| PCT Filed:
|
February 11, 2010 |
| PCT NO:
|
PCT/EP2010/051673 |
| 371 Date:
|
August 8, 2011 |
| Current U.S. Class: |
506/9; 435/7.92; 506/13 |
| Class at Publication: |
506/9; 435/7.92; 506/13 |
| International Class: |
G01N 33/569 20060101 G01N033/569; C40B 30/04 20060101 C40B030/04; C40B 40/00 20060101 C40B040/00 |
Foreign Application Data
| Date | Code | Application Number |
| Feb 16, 2009 | EP | 09002105.6 |
Claims
1. A device for serologically differentiating an infection with Yersinia
enterocolitica from an infection with Yersinia pseudotuberculosis,
wherein said device comprises (a) at least one antigen selected from the
group consisting of: YopD, YopH, YopM, YopE, V-AG, YopN and fragments
thereof having at least eight consecutive amino acids, and (b) least one
proteins selected from the group consisting of MyfA, PsaA, and fragments
thereof having at least eight consecutive amino acids and at least one
diagnostically relevant epitope, wherein each individual antigens is
spatially separately from the other.
2. Device according to claim 1, further wherein said device comprises
both the MyfA protein or fragment thereof, and the PsaA protein or
fragment thereof, wherein said fragments comprise at least eight
consecutive amino acids and at least one diagnostically relevant epitope
as set forth in claim 1.
3. Device according to claim 1, further wherein said device comprises the
YopD antigen or a fragment thereof having at least eight consecutive
amino acids as set forth in claim 1.
4. The device according to claim 1, further wherein the fragments of the
proteins used as antigens comprise at least 12 consecutive amino acids of
the respective antigen.
5. The device according to claim 1, further wherein the fragments of the
proteins used as antigens comprise at least 20 consecutive amino acids of
the respective antigen.
6. The device according to claim 1, further wherein the fragments of the
proteins used as antigen comprise at least 30 amino acids of the
respective antigen.
7. The device according to claim 1, wherein said device comprises a
diagnostic kit.
8. The device according to claim 7, wherein said kit comprises an ELISA
assay.
9. The device according to claim 7, wherein said kit comprises a
line-test.
10. The device according to claim 7, wherein said kit comprises
immunoblots, bead-based assays or microarrays.
11. (canceled)
12. (canceled)
13. (canceled)
14. A method of serologically differentiating an infection caused by
Yersinia enterocolitica from an infection caused by Yersinia
pseudotuberculosis, comprising the steps of: a. providing an antigenic
protein selected from the group consisting of MyfA, PsaA and fragments
thereof comprising at least 8 consecutive amino acids; and b. reacting
said antigenic protein with at least one antigen selected from the group
consisting of Yop D, Yop H, Yop M, Yop E, V-AG and Yop N and fragments
thereof having at least 8 consecutive amino acids and at least one
diagnostically relevant epitope, wherein the antigens are spatially
separated from one another.
Description
[0001] The genus Yersinia comprises three human-pathogenic Yersinia spp.,
Y. pestis, Y. pseudotuberculosis and Y. enterocolitica and eight further
species namely Y. aldovae, Y. bercovieri, Y. frederiksenii, Y.
intermedia, Y. kristensenii, Y. moolaretti, Y. rohdei and Y. ruckeri,
which rather play a role in humans as opportunistic pathogens in the case
of wounds and sepsis. Y. pestis causes plague and can be transmitted by
fleas from the natural rodent reservoir to humans. Y. enterocolitica and
Y. pseudotuberculosis occur in wild and domesticated animals in the
temperate to subtropical zones throughout the world. In Germany, the
intestinal disease caused by Y. enterocolitica and Y. pseudotuberculosis,
called yersiniosis, is, after salmonellosis (Salmonella enterica) and
campylobacter enteritis (Campylobacter jejuni), the third most common
bacterial enteritis disease notified annually to the Robert Koch
Institute (RKI) in Berlin. In Germany, 4987 cases of diseases caused by
Yersinia according to the RKI disease classification were reported to the
Robert Koch Institute in 2007, and 5162 in the year 2006. The highest
age-specific incidence was observed in young children in the age range
from 1 to 4 years (RKI). However, the actual frequency of these diseases
is not known exactly--many who become ill do not see a doctor if the
disease course is subclinical or mild and brief, many diseases are not
clarified aetiologically and not all diagnosed cases are reported. It is
estimated that up to 43% of blood donors in Germany and 31% of blood
donors in Finland have specific antibodies to Yersinia (tested by enzyme
immunoassays or immunoblots). This result suggests an unexpectedly high
prevalence of yersinioses experienced in industrial countries with high
standards of hygiene.
[0002] The enteropathogenic Y. enterocolitica and Y. pseudotuberculosis
pathogens occur in pigs, sheep, bovines and poultry and enter food (e.g.
raw pork) and drinking water mainly via the slaughtering process.
Furthermore, cases of transmission to pets have been described. It has
also been found that up to 100% of wild boar carry Yersinia
enterocolitica in the nasopharyngeal cavity. Yersinia are able to
multiply at low temperatures (>4.degree. C.). In the industrial
countries, multiplication in refrigerated foods represents the
epidemiologically most important form of distribution of Y.
enterocolitica and Y. pseudotuberculosis.
[0003] The exact infective dose is not known (presumably >10000
bacteria). The incubation time is two to five days after infection.
Enteropathogenic Y. enterocolitica and Y. pseudotuberculosis strains
generally colonise the intestine-associated lymphatic tissue of the
terminal ileum, in the so-called Peyer's patches (continuous aggregation
of lymphatic follicles). Following colonisation, the Yersinia overcome,
via so-called M cells in the follicle-associated epithelial cell layer of
the Peyer's patches, the gastrointestinal barrier of the organism and
spread via the draining lymphatic vessels in the mesenteric lymph nodes.
Y. enterocolitica then attacks and damages further regions of the
intestine, which explains the typical tissue damage of the small
intestine and colon in yersiniosis patients. Y. pseudotuberculosis shows
a course of infection similar to that of Y. enterocolitica, except that
mesenteric lymph nodes, liver and spleen are more often affected and
enteritis symptoms and excretion via the intestine are much less than
with Y. enterocolitica.
[0004] The enteritic form of Yersinia infections, also called yersiniosis,
is limited, in uncomplicated cases, to the gastrointestinal tract and is
characterised by watery diarrhoea for several days (called acute Yersinia
gastroenteritis). However, depending on patients' age, immune status,
histocompatibility type (HLA-B27) and sex, yersinioses can display
different courses and symptoms, for example fever, nausea, colic-like
lower abdominal pains (pseudoappendicitis), muscular pains and headaches
and inflammations in the pharyngeal region (pharyngitis), in the
mesenteric lymph nodes (acute mesenteric lymphadenitis) and in the ileum
and colon (Yersinia ileitis and colitis). In uncomplicated cases, the
disease abates after a few days or at the latest after two weeks.
[0005] In patients with underlying diseases, for example diabetes
mellitus, liver cirrhosis, iron storage diseases (dialysis patients,
thalassaemia) or immunosuppression, extraintestinal infections may occur
(e.g. septic forms). Not uncommonly, septic shock with high lethality
(approx. 75%) occurs after blood transfusion with Yersinia-contaminated
banked blood.
[0006] Apart from the intestinal and extraintestinal forms of yersiniosis,
in which the causative agent can generally be isolated, in up to 30% of
cases there are also concomitant or secondary diseases, generally with an
aseptic course. The most common secondary disease is HLA-B27-associated
reactive arthritis [abbreviation: ReA] (about 60-80% of ReA cases are
HLA-B27-positive). ReA starts approx. 1-4 weeks after onset of the
intestinal symptoms (but often without preceding intestinal symptoms).
Most often it is the joints of the lower extremities that are affected.
In most cases the symptoms abate after approx. 3-12 months, but a chronic
or relapsing course may also develop. Other complications that often
occur after yersiniosis are inflammations of the thyroid (thyroiditis),
of the heart muscle (myocarditis) and of the kidneys
(glomerulonephritis), reddening of the skin (erythema) of the lower
extremities (Erythema nodosum) and acute or chronic enlargement of the
lymph nodes (lymphadenopathies) or of the spleen (splenomegaly).
[0007] In yersinioses without further immunological complications, for
example reactive arthritis, the symptoms generally abate after a short
time. Therefore in most cases it is unnecessary to treat a Yersinia
infection with antibiotics. In the case of a septic course or persistent
symptoms, differential treatment with antibiotics is necessary. Owing to
the frequently occurring beta-lactamases with Yersinia, infections with
Y. enterocolitica or Y. pseudotuberculosis are treated
pathogen-specifically with gyrase inhibitors, tetracycline,
trimethoprim/sulfamethoxazole etc.
[0008] Related Yersinia species (e.g. Y. enterocolitica and Y.
pseudotuberculosis) are differentiated biochemically. Y.
pseudotuberculosis forms a biochemically uniform group, which is divided
into eight serogroups, of which the serovars I, II and III are of
importance in human medicine in Europe (Bottone, [1997] Clin. Microbiol.
Rev., 10, 257-276). In contrast, Y. enterocolitica is an extremely
heterogeneous species both biochemically and serologically, with
pathogenic and non-pathogenic, geographically separate subgroups. Y.
enterocolitica is divided into six biovars (BV)/biotypes with different
biochemical effects (1A, 1B, 2, 3, 4, 5) and approx. 60 serovars (with
different O and H antigens) (Wauters et al., [1987] Contrib. Microbiol.
Immunol., 9, 14-21). Whereas biovar 1A Yersinia mainly occur in the
environment, the known human-pathogenic Y. enterocolitica strains belong
to BV 1B (serotypes O:8, O:4, O:13, O:18, O:20, O:21, occurring mainly in
the USA), BV 2 (Europe [O:9], USA, Japan [O:5, 27]), BV 3 (O:9 and O:5,
27) and BV 4 (Europe and USA [O:3]). (Bucher et al., [2008] Foodborne
Pathog. Dis., 5, 273-280). Approximately 80-90% of reported cases of
Yersinia gastroenteritis in Germany are caused by Y. enterocolitica
serotype O:3 (RKI).
[0009] The virulence of the enteropathogenic Yersinia (Y. enterocolitica
biovars 1B, 2, 3, 4 and 5, Y. pseudotuberculosis) and of the
plague-causing Y. pestis is due to a highly conserved virulence plasmid
pYV with a size of 65-70 kb (in Y. pestis pCDI). These virulence factors
enable pathogenic Yersinia to survive in the host's lymphoid tissue. The
Y. enterocolitica biovar 1A does not carry a pYV plasmid and is therefore
regarded as non-pathogenic.
[0010] The pYV plasmid codes for the membrane protein YadA (Yersinia
adhesin) and a number of so-called Yersinia outer proteins (Yops) and the
associated secretory apparatus (T3SS), which is called Ysc (Yop
secretion). As substrate of T3SS, the Yops are injected as anti-host
effectors into eukaryotic cells (e.g. in macrophages). The protein
complex of T3SS consists of 27 proteins with known or unknown functions,
for example a regulatory function (YopQ, YopN), translocation function
(YopB, YopD) and effector function (YopH, YopE, YopT, YopP, YopO). The
adhesin YadA is also encoded on the virulence plasmid. It mediates the
adhesion of the pathogens on host cells and enables the Yops to inject
into the target cells. The so-called V antigen (LcrV) is also encoded on
the pYV plasmid. This antigen forms the tip of the Ysc injectisome,
regulates Yop secretion and modulation of the host's immune system.
[0011] The virulence of the Yersinia is also influenced by chromosomally
encoded factors, in addition to the plasmid-encoded virulence factors.
Adhesion of Yersinia on epithelial cells of the intestine requires among
other things the presence of the invasin Inv and of the adhesin Ail (the
"attachment invasion locus" of Y. enterocolitica), which can be expressed
by all enteropathogenic Yersinia.
[0012] Other known chromosomally encoded pathogenicity factors are e.g.
the secreted and thermally stable enterotoxin Yst, the so-called "mucoid
Yersinia factor" MyfA of Y. enterocolitica, or the homologous pH 6
antigen PsaA of Y. pseudotuberculosis and Y. pestis, the
yersiniabactin-siderophore system encoded on the so-called
high-pathogenicity island (HPI) (FyuA receptor with Irp1-9), the Ysa
Type-III secretory apparatus, the lipopolysaccharide LPS that is
characteristic of all Gram-negative bacteria, the enzyme urease and the
toxin complex TC that is active against insects (tcbA, tcaC, tccC).
[0013] The MyF fibril system consists of the three subunits MyfA, MyfB and
MyfC. The fibril is constructed from MyfA subunits, whereas MyfB and MyfC
form the transport and structuring apparatus. The MyfA surface antigen
with a size of approx. 17 kDa is expressed in vitro during the early
stationary growth phase, and full expression only takes place at
37.degree. C. in an acid environment (pH 6). The myfA gene is present in
human-pathogenic Y. enterocolitica strains (e.g. O:3, O:4, O:8; O:9) and
in approx. 16% of non-human-pathogenic Y. enterocolitica BV 1A strains
and shows a significant link to virulence. Leiva et al. showed, in
coagglutination experiments with sera from rabbits that had been
immunised intravenously with live Y. enterocolitica or Y.
pseudotuberculosis strains, that the antisera obtained against MyfA (Y.
enterocolitica) or PsaA (Y. pseudotuberculosis) allow bacteriological
differentiation between Y. enterocolitica (MyfA) and Y.
pseudotuberculosis (PsaA) strains (Leiva et al., Contrib. Microbiol.
Immunol., 13, 158-164). These immunisation experiments also show that
MyfA or PsaA are produced under laboratory conditions, i.e. under
controlled nutrient conditions (growth medium) and temperature and pH
conditions, and induce the production of the serum antibodies in
intravenously immunised rabbits. However, a serodiagnostic application in
humans is not under consideration. In particular, as the natural function
of the antigens is unknown, it can also not be expected automatically
that the MyfA or PsaA antigens are expressed during natural infection in
the human gastrointestinal tract by pathogenic Yersinia. Additionally it
has to be borne in mind that data from animal experiments can seldom be
applied to the diagnostic situation in humans, because as is well known,
the production of antibodies in animals can differ from that in humans.
[0014] The Psa-antigen complex (pH6 antigen) of enteropathogenic Y.
pseudotuberculosis was originally characterised in the plague-causing Y.
pestis as fimbriated structure with a diameter of 3-5 nm. The PsaA
subunits are arranged on the bacteria surface by the translocation and
structuring apparatus, which consists of PsaB and PsaC. The antigen
domain PsaA, with a size of approx. 17 kDa, shows approx. 44-47% amino
acid sequence homology with the Y. enterocolitica-homologous MyfA. As
with MyfA, the production of PsaA in Yersinia is induced under laboratory
conditions by temperature (37.degree. C.) and slightly acid pH (pH 6).
The PsaA deletion mutant strains of Y. pestis show a significantly
reduced virulence in vitro and in vivo.
[0015] The observations that MyfA and PsaA antigens are expressed under
laboratory conditions only at 37.degree. C. and at acid pH, and that an
immune response can be produced in laboratory mice and rabbits after
infection with precultured (in vitro) Yersinia strains, leads to the
presumption that these proteins might have a function during infection or
might be expressed in the acidic environment of the intestinal tract.
However, the exact functions of Myf and Psa during Yersinia infection,
and therefore the importance of these antigens for Yersinia pathogenesis,
are still unknown.
[0016] The classical diagnosis of the acute yersiniosis diseases is based
primarily on detection of the pathogen in the stool, e.g. by means of
cold enrichment, selective culture medium (e.g. so-called
cefsulodin-Irgasan.TM.-novobiocin agar culture medium [CIN-agar]),
biochemical properties (e.g. so-called API E20 test; bioMerieux, Paris,
France) and the detection of pathogen-specific nucleic acids (DNA) by
polymerase chain reaction (PCR). Detection of the microbe in the stool
may be possible for a period of 2 to 12 weeks. After the diarrhoea
symptoms have subsided, Yersinia are typically no longer detectable in
the stool.
[0017] Serology, i.e. detection of the individual serum antibody response
to Yersinia-specific O and H antigens (so-called Widal and passive
haemagglutination tests), virulence-associated proteins (e.g. by
enzyme-linked immunosorbent assay [ELISA] and immunoblotting) or
bacterial ultrasonicate (by means of complement-fixation reaction [CFR]),
is suitable according to current standards for supplementary diagnosis of
acute infection.
[0018] However, serodiagnostics is essential for clarifying secondary
diseases, for example reactive arthritis, because direct detection of the
pathogen, mostly after the acute infection has subsided, is not possible.
The present invention relates to diagnostic devices, by means of which an
infection with Yersinia enterocolitica can be differentiated
serologically from an infection with Yersinia pseudotuberculosis.
[0019] In an acute Yersinia infection, typically the Yersinia-specific
immunoglobulin (Ig) classes IgM, IgA and generally also IgG are
detectable. In the course of infection, the specific IgM and IgA response
is attenuated within 3-6 months (persistence of IgM: approx. 1-3 months
and IgA: approx. 2-4 months), whereas Yersinia-specific IgG antibodies
can persist for several years, possibly even life-long (in 80% of
patients after a Yersinia infection). In chronic Yersinia infection and
Yersinia-induced reactive arthritis, persistent IgA antibodies can be
detected for years, along with Yersinia-specific antibodies of the IgG
class. The Yersinia-specific antibodies of the IgM class are mostly no
longer detectable in secondary diseases.
[0020] The conventional serological methods of detection, such as the
Widal and complement-fixation reaction directed against whole cell
lysates, only possess low diagnostic sensitivity and specificity owing to
cross-reactivity with a large number of human pathogens (for example
Bartonella henselae, Borrelia burgdorferi, Chlamydia pneumoniae,
Rickettsia rickettsii, Escherichia coli, Brucella spp., Salmonella spp.).
Therefore enzyme immunoassays (ELISA) and immunoblots are currently
preferred for the detection of IgG, IgA and IgM antibodies to
recombinantly produced virulence-associated Yersinia-specific antigens
(e.g. Yops and V-AG).
[0021] Existing Yersinia serodiagnostics is based mainly on the reaction
for detecting the IgG and IgA (conditionally also IgM) response to
virulence plasmid pYV secreted Yop proteins, for example YopD, YopH,
YopM, YopE, V-AG and YopN. The specificity and sensitivity of these Yop
antigens is, however, in need of improvement and is supplemented
according to the invention with additional Yersinia-specific antigens.
[0022] In addition, owing to the similarity of the aetiology and of the
process of infection, a subclinical course of infection or a nonspecific
symptomatology and a high infection rate, it is difficult to
differentiate between Y. enterocolitica and Y. pseudotuberculosis
infections or secondary diseases caused by these pathogens (for example
ReA or post-enteritic arthritis, myocarditis, glomerulonephritis,
lymphadenopathies, splenomegaly, erythema nodosum) with the conventional
diagnostic test methods. However, a method for specific serological
detection (i.e. in particular differentiating between the most common
human-pathogenic Yersinia species Y. enterocolitica and Y.
pseudotuberculosis) is necessary, so as to be able to provide early and
effective treatment of yersinioses or prevention of secondary diseases
(i.e. adequate antibiotic therapy). The different proteins of Y.
enterocolitica (MyfA) and Y. pseudotuberculosis (PsaA) can make a
contribution to this.
[0023] Heesemann et al. (Microbial Pathogenesis [1988], p. 437-447)
describe the immune response of orally infected rabbits to virulent (pYV
plasmid) and non-virulent (no pYV plasmid) serotype O:3 strains of
Yersinia enterocolitica, which had been precultured overnight in neutral
growth medium (BHI). It is unlikely that the MyfA antigen was expressed
under these conditions owing to neutral pH and the growth phase. In
addition the presence of the PsaA antigen is ruled out (the authors only
used Y. enterocolitica strains). The antigens were separated using
SDS-electrophoresis and were investigated further by Western blotting. No
further purification was carried out. Moreover, the authors stated that
this method is rather unsuitable as such for diagnostic purposes, owing
to high cross-reactivity with intestinally pathogenic Escherichia coli
and Salmonella strains.
[0024] Tomaso et al. (European Journal of Epidemiology [2006], 21: 77-81)
and Stolck-Engelaar et al. (Scand. J. Infect. Dis. [1996], p. 571-575)
describe the seroprevalence of anti-Yersinia antibodies in healthy
Austrians and in Dutch yersiniosis patients. Determination is carried out
with a commercial Western Blot assay with the antigens Yop M, Yop H,
V-Ag, Yop D and Yop E. The antigens MyfA or PsaA are not used.
[0025] The only method based on the MyfA and PsaA antigens proposed to
date was described by Leiva et al., 1995. However, this related to a
bacteriological detection method for identifying pathogenic Yersinia
strains after growing the cells on an agar culture medium.
[0026] The present invention relates to a device in the broader sense for
serological differentiation of an infection with Yersinia enterocolitica
from an infection with Yersinia pseudotuberculosis. "Serological
differentiation" in the sense of the present application means that, on
the basis of a sample obtained from blood (serum, plasma), it is possible
to determine by means of an immunological assay whether it is an
infection caused by a strain of Yersinia enterocolitica or Yersinia
pseudotuberculosis. Said device contains at least one antigen selected
from a group of antigens that can be classed with the outer surface
proteins or secreted proteins of Yersinia. At least one of these antigens
must be used in the device, and it is not absolutely essential to use the
complete protein--it may be perfectly sufficient to use protein fragments
that have a diagnostically relevant epitope.
[0027] According to the invention, the antigens are used in essentially
pure form, and this is preferably achieved by producing the antigens
recombinantly rather than isolating them from cell lysate.
[0028] A fragment of one of the antigens listed below, which has at least
eight consecutive amino acids, preferably at least 12, more preferably at
least 20, even more preferably at least 30 consecutive amino acids and
quite particularly preferably at least 50 consecutive amino acids, is
sufficient. In a preferred embodiment the peptides have 10 to 30
consecutive amino acids. Each peptide/fragment has at least one
diagnostically relevant epitope.
[0029] When selecting the fragments, a region is selected that contains at
least one diagnostically relevant epitope. The epitope regions can be
localised by standard methods known by a person skilled in the art. It is
possible to determine the hydrophilicity/hydrophobicity of the protein
using suitable computer programs. Hydrophilic regions are as a rule
predestined to carry suitable epitopes, because in the folded protein the
hydrophilic regions end up on the surface. Hydrophobic regions are more
likely to be localised in the interior of the folded protein and are
therefore unlikely to be involved in diagnostically relevant epitopes.
The epitopes are preferably linear epitopes, but conformation epitopes
can also be used advantageously.
[0030] When suitable regions have been identified, these can either be
synthesised by chemical synthesis or produced by recombinant methods.
These proteins or peptides can then be reacted with suitable blood, serum
or plasma samples, whose aetiology has been determined with other,
medical parameters. In this way, a person skilled in the art can localise
suitable epitopes.
[0031] The devices according to the invention thus contain at least one
antigen or a fragment of one of these antigens selected from the group
consisting of antigens listed hereunder. These are the following
antigens:
TABLE-US-00001
YopD
(Seq ID No. 1)
MTINIKTDSPIITTGSQIDAITTETVGQSGEVKKTEDTRHEAQAIKSSEASLSRSQVPELIKPSQ
GINVALLSKSQGDLNGTLSILLLLLELARKAREMGLQQRDIENKAAITAQKEQVAEMVSGAKL
MIAMAVVSGIMAATSTVASAFSIAKEVKIVKQEQILNSNIAGRDQLIDTKLQQMSNTSDKAVS
REDIGRIWKPEQVADQNKLALLDKEFRMTDSKANAFNAATQPLGQMANSAIQVHRGYSQA
EVKEKEVNASIAANEKQKAEEAMNYNDNFMKDVLRLIEQYVSSHTHAMKAAFGVV.
YopH
(Seq ID No. 2)
MNLSLSDLHRQVSRLVQQESGDCTGKLRGNVAANKETTFQGLTIASGARESEKVFAQTVLS
HVANIVLTQEDTAKLLQSTVKHNLNNYELRSVGNGNSVLVSLRSDQMTLQDAKVLLEAALR
QESGARGHVSSHSHSVLHAPGTPVREGLRSHLDPRTPPLPPRERPHTSGHHGAGEARAT
APSTVSPYGPEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCCRQTAVRA
DLNANYIQVGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFR
QSGTYGSITVESKMTQQVGLGDGIMADMYTLTIREAGQKTISVPVVHVGNWPDQTAVSSEV
TKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQLIGAMCMNDSRN
SQLSVEDMVSQMRVQRNGIMVQKDEQLDVLIKLAEGQGRPLLNS.
YopN
(Seq ID No. 3)
MTTLHNISYGNTTLRNEHPETASSQIVNQTLGQFRGESVQIVSGTLQSIADMAEEVTFVFSE
RKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELEQKQNVSELLSLLSNSPNISLSQLKAY
LEGKSEEPSEQFKMLCGLRDALKGRPELAHLSHLVEQALVSMAEEQGEAIVLGARITPEAY
RESQSSVNPLQPLRDTYRDAVMGYQGIYAIWSDLQKRFPNGDIDSVILFLQKALSADLQSQ
QSGSGREKLGIVISDLQKLKEFGSVSDQVKGFWQFFSEGKTNGVRPF.
YopE
(Seq ID No. 4)
MPKISSFISTSLPLPTSVSGSSSVGEMSGRSVSQQKSEQYANNLAGRTESPQGSSLASRIT
EKLSSMARSAIEFIKRMFSEGSHKPVVTPAPTPAQMPSPTSFSDSIKQLAAETLPKYIQQLSS
LDAETLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAILNTPVCGIPFSQWGTI
GGAASAYVASGVDLTQAANELKGLAQQMHQLLSLM.
YopM
(Seq ID No. 5)
MFINPRNVSNTFLQEPLRHSSDLTEIPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM
AVSRLRDCLDRQAHELELNNLGLSSLPELPPHLERLVASCNSLTELPELPQSLKSLEVYENN
LKALPDLPPLLVDLRVFNNQLEELPELQNLPFLTEIYANNNSLKTLPDLPPSLVDLNVRENYL
TALPELPQSLIFLDISDNILSGLSELPPNLSCLDASRNGIRSLCDLPPSLVYLDVRDNQLIELPA
LPSGLERLIASFNHLAELPELPPNLYYLDASRNEISSLCDLPPSLVDLNVRKNQLIELPALPPD
LERLIASFNHLAELPELPPNLSYLDASRNEISSLCDLPPSLVDLNVRKNQLIELPALPPDLERLI
ASFNHLAELPELPPNLSYLDASRNEISSLCDLPPSLVELDVRDNQLIELPALPPHLERLIASLN
HLAEVPELPQNLKQLHVEHNALREFPDIPESVEDLRMDSERVIDPYEFAHETIDKLEDDVFE.
V-AG (also called LCRV)
(Seq ID No. 6)
MIRAYEQNPQHFIEDLEKVRVEQLTGHGSSVLEELVQLVKDKKIDISIKYDPKKDSEVFAERV
ITDDIELLKKILAYFLPEDAILKGGHYDNQLQNGIKRVKEFLESSPNTQWELRAFMAVMHFSL
TADRIDDDILKVIVDSMNHHGDARSKLREELAELTAELKIYSVIQAEINKHLSSSGTINIHEKSI
NLMDKNLYGYTDEEIFKASAEYKILKKMPQTTIKDDELHEVGVIAGAEKQIVSIKNFLESENKR
TGALGNLKDSYSYNKDNNELSHFATACSDKSRPLNDLVSQKTTQLSDITSRFNSAIEALNRFI
QKYDSVMQRLLDDTR.
[0032] In addition to the antigen from the first group of antigens, the
device according to the invention also has at least one of two further
proteins, namely either the protein MyfA and/or the protein PsaA or
fragments of one of these two proteins. Once again the fragments have a
minimum size of at least 8 consecutive amino acids, preferably at least
12 consecutive amino acids, more preferably at least 20, particularly
preferably at least 30 and quite particularly preferably at least 50
consecutive amino acids of one of the proteins MyfA and/or PsaA.
[0033] It is preferable for the device to have the two complete proteins
MyfA and PsaA or fragments thereof together, wherein the individual
antigens are spatially separate from one another. The amino acid
sequences of the two proteins MyfA and PsaA (without leader sequence) are
shown below.
TABLE-US-00002
MyfA (132-AA)
(Seq ID No. 7)
MEPTVINSKDISATKTVKEGGSFSVEFKATENEIVSGKLDADTPAFHL
VMSDSGEHKGWNVRPTGASEGGQMVSADGTRVDLHTNELSWDNDHWWI
DDGSERVEATFFLAAGDEVKAGEYQFTGRVEEYVE.
PsaA (134-AA)
(Seq ID No. 8)
MSTVINSKDVSGEVTVKQGNTFHVDFAPNTGEIFAGKQPGDVTMFTLT
MGDTAPHGGWRLIPTGDSKGGYMISADGDYVGLYSYMMSWVGIDNNW
YINDDSPKDIKDHLYVKAGTVLKPTTYKFTGRVEEYVF.
[0034] The proteins MyfA or PsaA are encoded by the nucleotide sequences
MyfA or PsaA shown below and can be produced recombinantly using suitable
vectors and host cells.
TABLE-US-00003
myfA
(Seq ID No. 9)
atggaaccgactgttattaatagtaaagacatctctgcaacaaaaactgttaaagagggaggttcgttctcagt-
tgaattcaaggc
cactgaaaacgagattgtgtcaggcaaattggatgcagatacacctgccttccatctggtaatgtcggactcag-
gggaacataaa
ggttggaatgttcggcctaccggtgcatctgagggaggacagatggtttctgcagatggtaccagagttgactt-
acatacaaatga
gctatcgtgggataacgaccactggtggatagatgacggttctgagcgtgtggaagcgactttctttcttgctg-
ctggcgacgaggtt
aaagcaggtgaatatcagttcactgggcgtgttgaggaatatgtcgagtaa
psaA
(Seq ID No. 10)
atgtctactgtcattaactccaaggatgtttctggtgaggtgactgtcaagcagggaaacacattccacgtcga-
ttttgcgcctaaca
caggagagatttttgcgggtaaacagccgggtgatgtcactatgtttacgctaactatgggtgatactgcacca-
cacggtggttggc
gtttgattccaacaggggactcaaaaggtggatatatgatcagcgccgatggtgactatgttggtttatacagt-
tatatgatgtcat
gggtaggtatagataataactggtatataaatgatgactctcctaaagatataaaagatcatctgtacgttaag-
gcagggactgtcc
ttaaaccaacgacttataaattcacggggcgtgttgaagagtatgtattttaa
[0035] The individual antigens are, according to the invention, arranged
spatially separately from one another in the test device or the test kit.
In the case of Western Blots, for example, the antigens can be applied in
the form of bands on the carrier material, wherein the individual
antigens are in each case present in a particular, well-defined band.
This spatial separation of the individual antigens can also be achieved
if the antigens are applied spatially separately from one another in a
line-assay. However, it is also possible to apply the individual antigens
on a microtitre plate, so that only one antigen is present in each well.
In an alternative embodiment, in each case an antigen is applied on a
type of carrier (for example spheres), so that only one antigen is bound
to each carrier. As an alternative, the antigens can be applied to assay
plates (microchips), wherein the individual antigens are fixed on
specified points on said chips.
[0036] According to the invention, first it is determined, by reaction
with at least one, or even a plurality of antigens selected from the
group Yop D, Yop H, Yop M, Yop E, V-AG and/or Yop N, whether it is a
Yersinia infection. If the result of this test is positive, it is
determined, using the antigen MyfA and/or PsaA, whether the infection is
caused by Yersinia enterocolitica or Y. pseudotuberculosis. The
individual detection steps can be carried out either simultaneously or
successively.
[0037] A device for serologically detecting an infection by Yersinia
species is, according to the invention, in a preferred embodiment a
diagnostic kit. This is to be understood as a device that is used by
diagnostic laboratories for serological diagnosis. In a preferred
embodiment the antigens are bound spatially separately from one another
on a carrier matrix, for example wells of a microtitre plate, spheres,
nitrocellulose or nylon. The antibodies (mainly of classes IgG, IgM and
IgA) present in a sample from a patient (e.g. blood, serum, plasma,
saliva) react with the bound antigens and so are immobilised. In a
preferred embodiment these are diagnostic kits, wherein ELISA assays
represent a preferred embodiment. In the case of ELISA assay kits,
usually the antigen is bound to the wells of a microtitre plate. The
specific antibodies present in the samples can react with the antigens.
The antibodies from serum or plasma, which have bound specifically to the
antigens present in the wells, are as a rule detected with
anti-antibodies, which carry a marker, preferably an enzyme marker.
[0038] Another preferred embodiment of the device according to the
invention comprises so-called line-tests. In this case, a plurality of
antigens are applied on the test strips according to a predetermined
pattern. The blood samples to be investigated (sera or plasmas) are
reacted with the test strips and antigen-antibody reactions are detected
by enzyme-labelled antibodies and subsequent colour reaction. A
conclusion can be drawn about the infection or infective agent from the
specific pattern of the reactivities or colour signals.
[0039] The device according to the invention can also be an immunoblot or
Western blot. In this case, the diagnostically relevant proteins are
first separated according to size for example by diffusion, capillary
action or electrophoresis and transferred to a carrier material, for
example a nylon membrane or a nitrocellulose membrane, and fixed there.
This carrier material with the proteins or protein fragments bound
thereto is reacted with the patient's blood samples (serum or plasma).
[0040] The immobilised specific antibodies can for example be detected by
reaction with an anti-antibody. Preferably various anti-antibodies can be
used, which react either with IgG, IgM or IgA. This makes further
differentiation of the immune response possible. As a rule these
anti-antibodies carry a marker. This can be an enzyme, which catalyses a
colour reaction, but it can also be fluorescent residues or radioactive
residues. What is important is that antibodies bound to antigens can be
detected with the anti-antibodies.
[0041] In another embodiment, the device according to the invention is a
bead-based assay. A known commercial application of these bead-based
microarrays is the Luminex-XMAB technology from Luminex Corporation
(Austin, USA). This system uses microspheres (so-called beads) and
evaluation is based on flow cytometry. In the case of
fluorescence-labelled embodiments, the antigens according to the
invention can be fixed on beads and the binding of the antibodies to the
antigens is visualised with suitable labelling, e.g. fluorescence.
[0042] Another preferred embodiment of the device according to the
invention relates to protein microarrays. In this case various antigens
are fixed in a narrow space on a surface. As it is known which antigen is
present in which place, after visualisation of the antigen-antibody
reaction for example by means of a colour reaction or fluorescence
labelling, it is also possible to state which antigen has reacted with
the antibodies in the serum.
[0043] Usually the individual antigens are fixed in the device in such a
way that after the reaction it is possible to establish with which
particular antigen the antibodies present in the sample have reacted. In
an ELISA assay, for example, the individual antigens are put in different
cavities of the microtitre plate. In the line-assay, the antigens are
sprayed on different strips of the carrier material and in the case of
bead and planar microarrays the respective antigens are always applied at
a defined place on the carrier or defined beads. The devices according to
the invention are used for detecting human-pathogenic Yersinia species or
subspecies. By combining different antigens, on the one hand it is
possible to perform sensitive and specific detection of the pathogens and
on the other hand, in a preferred embodiment a differential-diagnostic
detection is also possible, wherein it is possible to distinguish between
an infection caused by Yersinia enterocolitica and an infection with
Yersinia pseudotuberculosis.
[0044] Another essential aspect of the present invention is also that
serological detection or serological differentiation is possible when the
acute Yersinia infection has already abated. For treating these secondary
diseases it is essential to be able to determine which bacterium
(Yersinia enterocolitica or Yersinia pseudotuberculosis) caused the
original infection.
[0045] The device according to the invention thus has at least two
different antigens, wherein one antigen is selected from the group
consisting of the antigens YopD, YopH, YopM, YopE, V-AG and YopN
described in more detail above. The other group comprises the antigens
MyfA and PsaA.
[0046] In a particularly preferred embodiment the device comprises the
antigen YopD and the antigen YopH together with either MyfA or PsaA.
[0047] In a still further preferred embodiment the device according to the
invention comprises the antigens YopD, YopH, YopM and either MyfA or
PsaA, the combined use of MyfA and PsaA being quite particularly
preferred, however.
[0048] In a particularly preferred embodiment the device according to the
invention thus has the proteins MyfA and/or PsaA or fragments thereof, as
defined above, together with the following protein or protein
combinations, wherein these proteins can also be in the form of
fragments, as defined above. The device according to the invention has at
least the protein YopD, which is preferably used together with YopH and
more preferably together with YopM combined with MyfA and/or PsaA.
[0049] Another preferred embodiment comprises the proteins or fragments of
YopD, YopH, YopM and YopE together with MyfA and/or PsaA.
[0050] Another preferred embodiment comprises the proteins and/or
fragments of YopD, YopH, YopM, YopE, V-AG together with MyfA and/or PsaA.
[0051] Another preferred embodiment comprises a combination of proteins
and/or fragments with the following designations: YopD, YopH, YopM, YopE,
V-AG, YopN, and MyfA and/or PsaA.
[0052] The stated antigens can also be used in the form of fragments
thereof, wherein the fragments have a serologically relevant epitope.
When, according to the invention, fragments of the antigens are used, in
the case of the antigen MyfA, on the one hand the N-terminal fragment
with the amino acids 30-41 and on the other hand the C-terminal fragment
with the amino acids 148-159 is particularly preferred. In the PsaA
protein, the fragments that comprise the amino acids 27-37 (N-terminus)
and 144-155 (C-terminus) are particularly preferred. In this case
fragments are used which comprise this amino acid sequence and which have
the sizes defined in more detail above.
[0053] The present invention thus relates to the use of an antigenic
protein MyfA or a fragment thereof, as defined in more detail above,
either alone or together with the antigenic protein PsaA or a fragment
thereof, as defined above, for serologically detecting an infection
caused by Yersinia or an infection caused by Y. enterocolitica or Y.
pseudotuberculosis. This differentiation is clinically important, because
an infection caused by Yersinia enterocolitica can be treated differently
from an infection caused by Yersinia pseudotuberculosis.
[0054] With the device according to the invention, it is possible to
detect Yersinia, which are of great importance, as they are pathogenic
for humans. The Yersinia occur in farm animals, for example pigs and
poultry, and on infection can cause a disease in humans. It can therefore
be of considerable medical and epidemiological importance to detect, by
means of a simple and relatively inexpensive test kit, the course of the
chains of infection. This allows conclusions to be drawn about the
sources of the pathogens and these can be identified and possibly be made
harmless. It is thus possible to detect and differentiate the pathogens
of yersinioses.
[0055] The results that can be achieved with the detection according to
the invention are surprising, because it could not automatically be
assumed that the antigens MyfA and/or PsaA are also expressed in
sufficient amounts for antibody formation in the human body under real
infection conditions. Furthermore, it was not known that specific
antibodies of the IgG, IgM and IgA class against MyfA and PsaA antigens
are formed in humans.
[0056] Based on the relatively high protein homology (44%) between MyfA
and PsaA antigens and the already described interspecies homology or
interspecies cross-reactivity between non-pathogenic Yersinia strains and
other enterobacteria, for example E. coli and Salmonella species, it was
not to be expected that the MyfA or the PsaA antigen can be used for
differentiating the infective agent. The detection or differentiation is
preferably performed with human blood, in particular serum or plasma.
Determination is, however, also possible with cerebrospinal fluid or
saliva.
[0057] In a quite particularly preferred embodiment the sample to be
investigated is on the one hand reacted with an antigen selected from the
group Yop D, Yop H, Yop M, Yop E, V-AG and Yop-N, quite particularly
preferably with Yop D. If this does not result in a positive reaction and
otherwise there is no special further suspicion, this can conclude the
diagnosis.
[0058] Conversely, if the sample to be investigated reacts positively with
this antigen, in particular Yop D, in a further diagnostic step the
sample to be investigated can be reacted with the antigen PsaA and/or
MyfA, preferably with both antigens. Furthermore, it is useful to
differentiate the antibodies found, as to whether they are IgG or IgA
antibodies. If the IgM or IgA finding is negative, but the IgG finding is
positive, presumably an infection has come to an end.
[0059] If the IgM or IgA finding, preferably IgA finding, is positive,
there may be an acute infection or a secondary disease. The infection is
caused by Yersinia enterocolitica if the IgG, IgM or IgA reaction,
preferably IgG finding, is positive with MyfA. If there is a positive
reaction with PsaA, it is an infection with Yersinia pseudotuberculosis.
[0060] The figures clarify preferred embodiments of the present invention
and explain the results obtained in the examples.
[0061] FIG. 1 shows the homologous amino acid sequence regions of the MyfA
and PsaA antigens. The homologous regions (consensus) are marked in
black. A line is drawn round the N- and C-terminal homologous regions.
[0062] FIG. 2 explains the in silico determination of the antigenic
domains of MyfA and PsaA. The antigenicity index was calculated on the
basis of the Jameson-Wolf algorithm and the hydrophilicity of the antigen
on the basis of the Kyte-Doolittle algorithm. The so-called leader
sequence is marked with a black arrow.
[0063] FIG. 3 shows a schematic representation of the DNA sequences of the
four His-Tag-MyfA fusion proteins used. The primer sequences used for
amplification are marked with arrows (I, II, III, IV). The leader
sequences are shown in light-grey and the regions homologous with PsaA
are shown in white.
[0064] FIG. 4 shows the chromatographic separation (SDS-polyacrylamide-gel
electrophoresis) of the MyfA partial fragments myfA 1-441, myfA 121-441
and myfA 121-447 (FIG. 3) with subsequent Coomassie Blue staining (left)
and immunoblot (myfA, myfA 1-441, myfA 121-441 and myfA 121-447; FIG. 3)
with anti-Y. enterocolitica (O:3 or O:9) and anti-MyfA sera from rabbit
(right).
[0065] FIG. 5 shows verification of the serological reactivity of the
purified MyfA total protein (MyfA) and the purified MyfA partial
fragments MyfA 1-441, MyfA 121-441 and MyfA 121-447 (FIG. 1; FIG. 3) by
means of line-assays. The test strips were incubated with four different
anti-Y. enterocolitica O:3, O:8 or O:9 sera from rabbit (1-4) before (*)
and after infection.
[0066] FIG. 6 shows the serological reactivity of human anti-Y.
enterocolitica or anti-Y. pseudotuberculosis serum with YopM, YopH, V-AG,
YopD, YopN, YopE, MyfA and PsaA in the line-assay.
[0067] FIG. 7 shows the IgG response to Yop, MyfA-MIK and PsaA-MIK
antigens with the tested Bavarian blood donor sera (n=40).
[0068] FIG. 8 explains the IgG response to Yop, MyfA-MIK and PsaA-MIK
antigens with the tested yersiniosis patient sera from Finland (n=18).
[0069] FIG. 9 shows the IgG response to Yop, MyfA-MIK and PsaA-MIK
antigens with the tested yersiniosis patient sera from Germany (n=23).
With the surface protein, YopD is particularly suitable for use in
diagnostic testing devices.
EXAMPLE 1
In Silico Determination of the Immunogenic Domains of the MyfA and PsaA
Antigens
[0070] Determination of the homologous antigen regions that might be
responsible for the immunogenic reactivity or cross-reactivity of the
MyfA and PsaA antigens, was carried out in silico by means of direct
amino acid sequence comparison (see FIG. 1). The homologous regions are
mainly located in the N- and C-terminus of the MyfA (AA 32-40 and
150-159) and PsaA (AA 29-38 and 149-158) antigen.
[0071] The antigenicity index and the hydrophilic character of the antigen
regions was determined in silico with the algorithms of Jameson and Wolf
(Comput. Appl. Biosci. (1988) p. 181-186) or of Kyte and Doolittle (Kyte
and Doolittle, (1982) J. Mol. Biol., 157, p. 105-132) (FIG. 2). The eight
>5 AA immunogenic domains of the PsaA antigen are probably located in
AA 30-48, 52-56, 59-67, 74-83, 87-96, 122-133, 144-150 and 151-158. The
seven putative >5 AA immunogenic domains of the MyfA antigen were
localised in AA 35-42, 43-54, 55-73, 79-100, 101-133, 139-148 and
152-159. According to the invention, these fragments are preferably used
in the diagnostic tests. However, as the predicative Kyte-Doolittle
algorithm is only informative conditionally, the immunogenic epitopes of
the new antigens were determined experimentally (Example 2).
Complete Total Protein Sequences:
TABLE-US-00004
[0072] (Seq ID No. 11)
MyfA (159-AA)
AA 1-29: Leader Sequence
AA 30-41: N-terminal fragment (Example 2)
AA 148-159: C-terminal fragment (Example 2)
MNMKKFVKKPLAIAVLMLASGGMVNMVHAEPTVINSKDISATKTVKEGGSFSVEFKATENEI
VSGKLDADTPAFHLVMSDSGEHKGWNVRPTGASEGGQMVSADGTRVDLHTNELSWDND
HWWIDDGSERVEATFFLAAGDEVKAGEYQFTGRVEEYVE
(Seq ID No. 12)
PsaA (158-AA)
AA 1-26: Leader Sequence
MKMKCFAKNALAVTTLMIAACGMANASTVINSKDVSGEVTVKQGNTFHVDFAPNTGEIFAG
KQPGDVTMFTLTMGDTAPHGGWRLIPTGDSKGGYMISADGDYVGLYSYMMSWVGIDNNW
YINDDSPKDIKDHLYVKAGTVLKPTTYKFTGRVEEYVF
EXAMPLE 2
Experimental Determination of the Immunogenic Domains of the myfA Antigens
[0073] Preparation of the myfA Partial Fragments
[0074] Four fragments were prepared starting from the complete reading
frame of the MyfA antigen (Example 1). Both the complete reading frame
including the leader peptide and N-, C-, and N- and C-terminally
shortened partial fragments are shown (FIG. 1; FIG. 3).
[0075] Specific amplification of the myfA partial fragments was carried
out by PCR with chromosomal DNA from Y. enterocolitica serotype O:3/4 (Y.
enterocolitica subsp. palearctica strain Y-11; DMSZ 13030) as templates.
[0076] The resulting amplificates were cleaved enzymatically with
restriction endonucleases and ligated into a suitable vector, pET21-b,
which had been cut with the same restriction endonucleases as the
amplificates. After transformation of the ligation preparation into a
suitable E. coli strain, e.g. BL21 pLys, individual clones were tested
for the presence of myfA and psaA by agarose-gel electrophoresis of
enzymatically cleaved plasmid DNA and then sequenced. In addition, the
expression of the partial fragments was identified and characterised by
analysis of the expression products by SDS-polyacrylamide-gel
electrophoresis with subsequent Coomassie Blue staining or subsequent
transfer to nitrocellulose followed by immunological detection. The
fusion proteins were purified by Ni-NTA column chromatography according
to the manufacturer's information (the company Qiagen).
[0077] In addition to the complete reading frame of MyfA (MyfA; FIG. 3),
three partial fragments of the antigen were cloned as His-Tag fusion
proteins into pET21-b vector. The first fragment (MyfA 1-441) was cloned
without the C-terminal region homologous to PsaA (Example 1; FIG. 1) and
comprises the AA 1-147 (nucleotide [NT] 1-441). The second fragment (MyfA
121-441) codes for the AA 40-147 (NT 121-441) and therefore does not
contain the N- and C-terminal regions homologous to PsaA (Example 1; FIG.
1). The third fragment (MyfA 121-477) codes for the AA 40-159 (NT
121-477) and does not contain the N-terminal sequence of MyfA (Example 1;
FIG. 3; FIG. 1).
[0078] The following oligonucleotide primers were used for preparing the
sequences.
TABLE-US-00005
Primer 1 (I):
(Seq ID No. 13)
myfA-f: GTA ATT CCA TAT GAA TAT GAA AAA ATT TGT
Primer 2 (II):
(Seq ID No. 14)
myfA_121f: GTA ATC CCA TAT GGC AAC AAA AAC TGT
Primer 3 (III):
(Seq ID No. 15)
myfA_441rev: TTA CTC GAG TTC ACC TGC TTT AAC
Primer 4 (IV):
(Seq ID No 16)
myfA_rev: ATC TAC TCG AGC TCG ACA TAT TCC TCA A
[0079] The following primer combinations were used:
myfA: primer 1 and primer 4 myfA 1-441: primer 1 and primer 3 myfA
121-441: primer 2 and primer 3 myfA 121-477: primer 2 and primer 4
EXAMPLE 3
Verification of Antigenicity
[0080] The immunological reactivity/antigenicity of the MyfA fusion
proteins (Example 2) was tested by immunoblot (FIG. 4) and line-assay
(FIG. 5)
[0081] FIG. 4, left, shows in each case cell lysates (ZL) of MyfA total
protein (MyfA, including leader sequence; Example 1; FIG. 1; Example 2;
FIG. 3) and/or E. coli BL21 pLys cells expressing one of the three MyfA
partial fragments (MyfA 1-441, MyfA 121-441 and MyfA 121-447) and the
His-tagged recombinant MyfA proteins (MyfA 1-441, MyfA 121-441 and MyfA
121-447) purified by Ni-NTA column chromatography.
[0082] FIG. 4, right, shows an immunoblot with two anti-Y. enterocolitica
O:3 or O:9 sera and an anti-MyfA serum from rabbit. The MyfA-protein
shortened on the N- and C-terminus (MyfA 121-441; Example 1; FIG. 1;
Example 2; FIG. 3) does not show any reaction with the sera used. The
protein shortened on the C-terminus MyfA 1-441 (FIG. 1; FIG. 2) shows a
weaker reaction than the protein shortened on the N-terminus MyfA 121-447
(FIG. 1; FIG. 2). Therefore the C-terminus appears to contain a
particularly important immunogenic region, but the N-terminus is also
diagnostically important.
[0083] The proteins could be detected by detecting the His-tags with a
nickel-NTA conjugate from rabbit (very weak reaction, no double bands).
The immunoblot with an anti-Y. pseudotuberculosis serum from rabbit did
not show any reaction.
[0084] The immunological reactivity/antigenicity of the purified MyfA
total protein (MyfA) and of the purified MyfA partial fragments MyfA
1-441, MyfA 121-441 and MyfA 121-447 (Example 1, FIG. 1; Example 2; FIG.
3) was verified by means of line-assays (FIG. 5). The test strips were
incubated with four different anti-Y. enterocolitica sera from rabbit
(serum 1 and 4: serotype O:3; serum 2: serum O:9, serum 3: O:8) before
(*) and after experimental peroral infection with precultured Yersinia.
Recombinantly produced YopD and YopH antigens were incorporated into the
assay as immunisation or assay control. Additionally, so as to be able to
evaluate the cross-reactivity of the MyfA and PsaA antigens,
recombinantly produced PsaA antigen was also included in the assay (FIG.
5). The reactivity of the antigens was in addition verified with an
anti-Y. pseudotuberculosis serum from rabbit.
[0085] The blood samples taken before infection showed no reactivity with
the antigens of the assay (i.e. YopD, YopH, MyfA, MyfA 1-441, MyfA
121-441, MyfA 121-447, PsaA). After the experimental infection, all four
samples reacted with the Yersinia-specific antigens YopD and YopH (FIG.
5). As already shown in the immunoblot (FIG. 4), the C- (.DELTA.
C-terminus) or the N- and C- (.DELTA. N- and C-terminus) terminally
shortened MyfA protein showed markedly reduced reactivity and the
N-terminally shortened protein (.DELTA. N-terminus) reduced reactivity in
comparison with the MyfA total protein (FIG. 5). Interestingly, sera No.
2 (very weakly), 3 (weakly) and 4 (positively) also reacted with the
applied PsaA antigen. The anti-Y. pseudotuberculosis serum from rabbit
reacted very strongly with YopD and PsaA, but showed no reactivity with
the total antigen MyfA or its partial fragments. The cross-reactivity of
the anti-Y. enterocolitica sera with PsaA occurring in the assay is
possibly caused by semi-optimum production conditions (i.e. purification
via His-Taq, buffer conditions or antigen concentration too high). In
addition, cross-reactivities occurring between MyfA and PsaA or other
Yersinia surface proteins (so-called RPs) are known in rabbit sera
immunised with precultured Yersinia (Leiva et al., Heesemann et al.). For
the subsequent experiments, the MyfA and PsaA antigens were recloned
(without His-Taq and leader sequence), purified and the assay conditions
were optimised (Examples 3-5).
EXAMPLE 4
Preparation and Purification of the Recombinant MyfA and PsaA Antigens
[0086] MyfA (pmyfA MIK) and PsaA (ppsaA-MIK) expression clones were
prepared starting from the complete reading frames (Example 1) of the two
antigens. The following oligonucleotide primers were used for preparation
of the sequences. The proteins were prepared without leader sequence
(MyfA AA 1-29 and PsaA AA 1-26; Example 1), as preliminary experiments
had shown that the leader peptide causes reduced expression.
TABLE-US-00006
pmyfA-MIK
Primer 5 (Seq ID No. 17):
myfA-F-Ndel: CAC ATA TGG AAC CGA CTG TTA TTA ATA
GTA AAG ACA TC
Primer 6 (Seq ID No. 18):
myfA-R-Baml: ATG GAT CCT TAC TCG ACA TAT TCC TCA
ACA CG
ppsaA-MIK
Primer 7 (Seq ID No. 19):
psaA-F-Ndel: GCC ATA TGT CTA CTG TCA TTA ACT CCA
AGG ATG
Primer 8 (Seq ID No. 20):
psaA-R-Baml: CAG GAT CCT TAA AAT ACA TAC TCT TCA
ACA CGC C
[0087] Specific amplification of the myfA fragment was performed by PCR
with chromosomal DNA from Y. enterocolitica serotype O:3/4 (Y.
enterocolitica subsp. palearctica strain Y-11; DMSZ 13030) as template.
The psaA fragment was amplified with chromosomal DNA from Y.
pseudotuberculosis serotype 1A.
[0088] The resulting amplificates were enzymatically cleaved with
restriction endonucleases Nde I and Bam HI and were ligated into a
suitable vector, pET3c (New England Biolabs). After transformation of the
ligation preparation into the E. coli strain UT 5600 (Elish et al. [1998]
J. Gen. Microbiol., 134, p. 1355-1364) the clones were tested for the
presence of the myfA and psaA fragments by agarose-gel electrophoresis of
enzymatically cleaved plasmid DNA and by DNA sequencing (see below). In
addition, the expression of the antigens was identified and characterised
by analysis of the expression products MyfA-MIK and PsaA-MIK by
SDS-polyacrylamide-gel electrophoresis followed by Coomassie Blue
staining or subsequent transfer to nitrocellulose followed by
immunological detection.
[0089] The recombinant proteins MyfA-MIK and PsaA-MIK were purified by
anion-exchange and cation-exchange column chromatography. An anion
exchange (Q-Sepharose Fast Flow; GE Healthcare, Munich, Germany) was
performed in the first step, a cation exchange (S-Source 15; GE
Healthcare) in the second step and an anion exchange (Q-Source 30; GE
Healthcare) in the third step. The individual purification steps and/or
the purified protein were verified by SDS-polyacrylamide-gel
electrophoresis with subsequent Coomassie Blue staining or subsequent
transfer to nitrocellulose followed by immunological detection and were
characterised with respect to the degree of purity, possible protein
cleavage and immunological reactivity.
EXAMPLE 5
DNA Sequencing of the pmyfA-MIK and ppsaA-MIK Expression Clones and
Resultant Protein Sequences (AA) MyfA-MIK and PsaA-MIK
[0090] The START (atg) and STOP (uaa) codons are marked in black.
DNA Sequences
TABLE-US-00007
[0091] of pmyfA-MIK (396 bp) (Seq ID No. 21):
atggaaccgactgttattaatagtaaagacatctctgcaacaaaaactgttaaagagggaggttcgttctcagt-
tgaattcaaggc
cactgaaaacgagattgtgtcaggcaaattggatgcagatacacctgccttccatctggtaatgtcggactcag-
gggaacataaa
ggttggaatgttcggcctaccggtgcatctgagggaggacagatggtttctgcagatggtaccagagttgactt-
acatacaaatga
gctatcgtgggataacgaccactggtggatagatgacggttctgagcgtgtggaagcgactttctttcttgctg-
ctggcgacgagg
ttaaagcaggtgaatatcagttcactgggcgtgttgaggaatatgtcgagtaa
ppsaA-MIK (402 bp) (Seq ID No. 22):
atgtctactgtcattaactccaaggatgtttctggtgaggtgactgtcaagcagggaaacacattccacgtcga-
ttttgcgcctaa
cacaggagagatttttgcgggtaaacagccgggtgatgtcactatgtttacgctaactatgggtgatactgcac-
cacacggtggtt
ggcgtttgattccaacaggggactcaaaaggtggatatatgatcagcgccgatggtgactatgttggtttatac-
agttatatgatg
tcatgggtaggtatagataataactggtatataaatgatgactctcctaaagatataaaagatcatctgtacgt-
taaggcagggac
tgtccttaaaccaacgacttataaattcacggggcgtgttgaagagtatgtattttaa
Amino acid sequences (AA)
TABLE-US-00008
MyfA-MIK (132-AA)
(Seq ID No. 23)
MEPTVINSKDISATKTVKEGGSFSVEFKATENEIVSGKLDADTPAFHL
VMSDSGEHKGWNVRPTGASEGGQMVSADGTRVDLHTNELSWDNDHWWI
DDGSERVEATFFLAAGDEVKAGEYQFTGRVEEYVE.
PsaA-MIK (134-AA)
(Seq ID No. 24)
MSTVINSKDVSGEVTVKQGNTFHVDFAPNTGEIFAGKQPGDVTMFTLT
MGDTAPHGGWRLIPTGDSKGGYMISADGDYVGLYSYMMSWVGIDNNW
YINDDSPKDIKDHLYVKAGTVLKPTTYKFTGRVEEYVF.
EXAMPLE 6
Serological Differentiation of Yersinioses Caused by Y. enterocolitica or
Y. pseudotuberculosis
[0092] Two human serum samples were defined by Widal reaction as anti-Y.
enterocolitica serotype O:3 (LYE16)- or as anti-Y. pseudotuberculosis
(LYE01)-IgG-positive.
[0093] Comparison of the serological IgG reactivity of Yop, MyfA-MIK and
PsaA-MIK antigens (Example 3) by means of line-assays showed that the Y.
pseudotuberculosis-positive serum sample reacted very strongly with YopD
and PsaA. In contrast, the anti-Y. enterocolitica-IgG-positive sample
reacted with the antigens YopM, YopH, V-AG, YopD, YopN, YopE and MyfA.
This serum sample also showed very weak reactivity with PsaA.
[0094] There is thus an indication that the antigens MyfA-MIK and PsaA-MIK
make possible the serological differentiation of Y. enterocolitica and Y.
pseudotuberculosis infections.
EXAMPLE 7
Comparison of the Serological Prevalence of the Anti-Yop, Anti-MyfA and
Anti-PsaA Antibodies of the IgG, IgM and IgA Class in Serum Samples from
Bavarian Blood Donors or in Serum Samples from Finnish and German
Yersiniosis Patients
[0095] The IgG, IgM and IgA response to recombinantly produced YopM, YopH,
V-AG, YopD, YopN, YopE, MyfA-MIK and PsaA-MIK (Example 4 and 5) antigens
with sera from three different sera collections (i.e. Bavarian blood
donors n=40; Bavaria; Germany, yersiniosis patients from Finland [KTL,
n=18] and yersiniosis patients from Germany [YeD, n=23]) were
investigated by line-assays. The recomLine Yersinia from the company
Microgen GmbH was used as reference test.
Blood Donor Sera
[0096] 48% (n=19) of the tested blood donor sera from Bavaria (n=40)
showed IgG reactivity with YopD (FIG. 7; Table 1). Eight serum samples
had an IgG response, which was not directed against YopD but exclusively
against YopH (n=4), YopH and YopN (n=1), YopH and V-AG (n=1), YopM (n=1)
and PsaA-MIK (n=1). Three of the samples reacted with the two new
Yersinia antigens MyfA-MIK (n=4) and PsaA-MIK (n=9; Table 1).
[0097] As the sera were obtained from healthy donors, IgM antibodies to
YopD could not be detected in any of the sera tested (Table 1). Three
Yop-IgG-positive sera (n=19) had an isolated IgM titre directed against
YopH (n=2; 11%; serum No. 1087: high IgG titre against YopD and PsaA;
serum No. 1099: high IgG titre against YopD) or PsaA (n=1; 5%, serum No.
1083: high IgG titre against YopD, MyfA-MIK and PsaA-MIK). None of the
samples tested reacted with MyfA-MIK (Table 1).
[0098] Seven YopD-IgG-positive serum samples from blood donors (n=19)
showed an IgA titre against YopD (Table 1). Three of the sera tested
reacted with PsaA-MIK. Interestingly, the Yop-IgG-negative serum sample
No. 1080 showed a very weak isolated reactivity with PsaA. The YopD and
PsaA-MIK IgG-high positive serum samples No. 1096 and No. 1110 also had a
strong (serum No. 1096) or weak (serum No. 1110) IgA response to PsaA-MIK
(Table 1). None of the samples tested reacted with MyfA-MIK (Table 1).
Based on the parallel occurrence of anti-IgA-reactivity to the YopD,
Yop-N and PsaA antigens in the samples No. 1110, it is to be expected
that this is a diagnostically relevant serological finding, for example
recent Y. pseudotuberculosis infection or occurrence of reactive
arthritis.
Sera of Yersiniosis Patients from Finland
[0099] 17 (90%) of the sera tested from patients with suspected
Yersinia-induced reactive arthritis from Finland (n=18) showed an IgG
response to YopD (FIG. 8; Table 2). Eleven of the samples reacted with
MyfA-MIK (65%) and four with PsaA-MIK (24%) (FIG. 8; Table 2).
[0100] 15 (88%) of the sera tested had IgM antibodies to YopD (Table 2).
One serum (No. 52) also showed a strong IgM response to PsaA-MIK (Table
2).
[0101] 17 serum samples from yersiniosis patients (n=18) had an IgA titre
against YopD (Table 2). Three of the sera tested also reacted with
PsaA-MIK (No. 23, 24 and 40; Table 2).
Sera of Yersiniosis Patients from Germany
[0102] All (n=23) sera tested of yersiniosis patients from Germany showed
an IgG reactivity with YopD (FIG. 9; Table 3). 15 serum samples (65%)
additionally had an IgG response to PsaA-MIK. Four (17%) of the samples
reacted with the antigen MyfA-MIK (FIG. 9; Table 3). Interestingly, two
of the serum samples (serum 1038 and 1025) reacted with the two antigens
MyfA-MIK and PsaA-MIK. However, the IgG response to MyfA-MIK was much
weaker compared with PsaA-MIK (Table 3).
[0103] A low IgM response to YopD was only detected in two (9%) of the
sera tested (n=23), and to YopE in three sera (Table 3). One serum, No.
986, reacted very strongly with PsaA-MIK (Table 3).
[0104] All sera tested from yersiniosis patients had an IgA response to
YopD (Table 3). One of the samples also reacted with MyfA-MIK (serum No.
976) and another with PsaA-MIK (serum No. 1025). These sera also showed a
strong IgG response to MyfA-MIK or PsaA-MIK (Table 3).
[0105] Interestingly, the two tested collections of samples from
yersiniosis patients from Finland and Germany differ in anti-MyfA- and
anti-PsaA-IgG prevalence. Owing to low isolation rate or technically
difficult cultivation and isolation of the Y. pseudotuberculosis strains,
at present no reliable epidemiological data are available.
TABLE-US-00009
TABLE 1
The IgG, IgM and IgA response to recombinantly produced YopM, YopH, V-AG,
YopD, YopN, YopE, MyfA-MIK and PsaA-MIK antigens among the tested blood
donor sera from Bavaria (n = 40).
Serum YopM YopH V-AG YopD YopN YopE MyfA PsaA
IgG response
1075 1 4 4 2 4 4
1076 1 1
1077 2 4 4 2
1078
1079
1080
1081
1082 1 3
1083 4 1 4 2
1084
1085 3 1
1086 3 3
1087 4 4
1088
1089
1090 2
1091 2
1092
1093 2 1 4
1094 2
1095
1096 3 3 4
1097 1 3
1098 1 1
1099 3
1100
1101 1 3 2
1102 3 2 3
1103 3
1104 1
1105
1106
1107 1
1108 1 3
1109 2 2 2
1110 2 3
1111
1112 2 4 2
1113 2 2
1114 4
IgM response
1075
1076
1077
1078
1079
1080
1081
1082
1083 2
1084
1085
1086
1087 1
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099 4
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
IgA response
1075
1076
1077 1
1078
1079
1080 1
1081
1082 1
1083
1084
1085
1086
1087 4
1088
1089
1090
1091
1092
1093 1
1094
1095
1096 3
1097 3
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110 3 2 1
1111
1112
1113
1114 1
The reactivity was assessed semi-quantitatively with the following
assessment scheme:
1 = very weak reactivity,
2 = weak reactivity,
3 and 4 = strong reactivity.
TABLE-US-00010
TABLE 2
The IgG, IgM and IgA response to recombinantly produced YopM,
YopH, V-AG, YopD, YopN, YopE, MyfA-MIK and PsaA-MIK antigens
among the tested yersiniosis patient sera from Finland (n = 18).
V-
YopM YopH AG YopD YopN YopE MyfA PsaA
IgG response
1 1 3 3 4 2 3 1
5 2 4 1 4 1 3
6 1 1 4
11 3 1 3 2 1
16 2 2 3
19 3 4 2
23 2 3 3
24 2 4 3 4 3 1 4
34 3 3 1 2
35 2 3 3 4 1
36 2 2 2 4 1 1
40 3 3 3 4 1 2 3 1
44 3 1 3 1
47
50 2 3 4 3 1 2
51 3 4 3 4 3 3 1
52 1 4 2 4 2 3 1
53 3 4 2 4 1
IgM response
1 1 4
5 3
6 2
11 1
16 1
19 3
23
24 3
34
35 4
36 3
40 1
44 2
47
50 1
51 3
52 2 3
53 4
IgA response
1 2
5 2
6 4
11 1
16 2
19 2
23 2 4
24 1 4 3
34 2
35 3
36 3
40 1 2 1 4 2 2 1
44 1 4
47
50 3
51 1 2
52 2 1
53 3 4
The reactivity was assessed semi-quantitatively with the following
assessment scheme:
1 = very weak reactivity,
2 = weak reactivity,
3 and 4 = strong reactivity.
TABLE-US-00011
TABLE 3
The IgG, IgM and IgA response to recombinantly produced YopM, YopH, V-AG,
YopD, YopN, YopE, MyfA-MIK and PsaA-MIK antigens among the tested
yersiniosis patient sera from Germany (n = 23).
YopM YopH V-AG YopD YopN YopE MyfA PsaA
IgG response
262 2 2
327 4 2 4 3 2 2
1534 1 3 3 4 1 4 3
976 4 4 4 2
1038 2 3 2 3 1 2
158 2 3 1 4 2 3
58 2 3 4
321 4 2
326 4 2 4 2 2 2
333 1 4 2
1025 3 4 1 4
1547 1
111 4 2
1 3 4 3 4 4 3
252 1 4 2 4 2 4
262 3 3
113 4 2 4 3
986 4 4
320 2 2
1748 1 1 4 3
1176 3 3 3
1801 4 3
1810 4 3
IgM response
262
327
1534
976
1038 1
158 1
58 1
321 1
326
333 1
1025
1547
111
1
252
262
113
986 4
320
1748
1176
1801
1810
IgA response
262 2
327 2
1534 2
976 2 1
1038 2
158 3
58 2
321 3
326 2
333 3
1025 2 3
1547 1
111 3
1 3 3 3
252 2
262 3
113 3
986 2
320 2 1
1748 3 2
1176 4
1801 4
1810 4
The reactivity was assessed semi-quantitatively with the following
assessment scheme:
1 = very weak reactivity,
2 = weak reactivity,
3 and 4 = strong reactivity.
EXAMPLE 8
Diagnostic Relevance of the PsaA-MIK and MyfA-MIK Antigens in the
Diagnosis of Acute Y. pseudotuberculosis Infections
[0106] The abbreviation "MIK" indicates that the antigens are produced
recombinantly by the applicant.
[0107] The PsaA-MIK and MyfA-MIK antigens were used in a bead-based assay
system (Luminex) for detecting IgG, IgM and IgA reactivity to the
PsaA-MIK or the MyfA-MIK antigen. A collection of serum samples from
patients who had acute yersiniosis caused by Yersinia pseudotuberculosis
(K. Jalava, P. Nuorti: "Porkkanaraasteesta laaja Yersinia
pseudotuberculosis-epidemia, Kansanterveyslehti, 2003) was used. Eight Y.
enterocolitica IgG-positive (determined with so-called Widal
haemagglutination test and a blot assay) and 19 Y.
enterocolitica-negative routine samples were used as negative comparison
group. The results are presented in Table 4.
[0108] 96.9% (63 samples from 65 samples tested) of the tested Y.
pseudotuberculosis patient samples showed high IgG reactivity to the
PsaA-MIK antigen. Only three of the samples tested reacted in parallel to
both antigens (MyfA-MIK and PsaA-MIK). 44.6% of the samples had
anti-PsaA-MIK-IgM reactivity and 58.5% of the samples had
anti-PsaA-MIK-IgA reactivity. None of the samples tested reacted with the
MyfA-MIK antigen when antibodies of the IgM and IgA classes were
investigated.
[0109] 75.0% of the Y. enterocolitica WIDAL-positive and blot-positive
samples were IgG-positive for the MyfA-MIK antigen. None of these samples
reacted with the PsaA-MIK antigen. None of these samples showed IgM or
IgA reactivity to the PsaA-MIK or MyfA-MIK antigens.
[0110] None of the Yersinia IgG-negative samples (n=19) reacted with the
PsaA-MIK antigen. Three of the samples showed isolated anti-MyfA-MIK-IgG
reactivity and two of the samples showed isolated anti-PsaA-MIK-IgM
reactivity.
TABLE-US-00012
TABLE 4
Investigation of anti-PsaA-MIK and -MyfA-MIK IgG, IgM and
IgA reactivity in patients with yersiniosis caused by Y.
pseudotuberculosis
and in Y. enterocolitica-IgG - positive or Yersinia-IgG - negative
samples.
Sample IgG IgM IgA
collection PsaA MyfA PsaA MyfA PsaA MyfA
Y. 63 3 29 0 38 0
pseudo- (96.9%) (4.6%) (44.6%) (58.5%)
tuberculosis-
patients'
samples
n = 65
Y. 0 6 0 0 0 0
enterocolitica (75.0%)
IgG -
positive
n = 8
Yersinia IgG - 0 3 2 0 0 0
negative (15.8%) (10.5%)
n = 19
[0111] The present example provides evidence that, surprisingly, the
antigens PsaA or MyfA make it possible to differentiate infections with
Y. pseudotuberculosis from infections with Y. enterocolitica, although
there are relatively high homologies between the two antigens, which can
also lead to cross-reactivities. Cross-reactivities to MyfA-like or
PsaA-like antigens, which occur in other enterobacteria, can be ruled out
through the use of the other antigens described here, in particular Yop
D.
[0112] Based on these results it is to be assumed that the device
described here could also be used for serologically detecting an
infection caused by Y. pestis. However, because a Y. pestis infection--in
contrast to a Y. pseudotuberculosis infection--is typically associated
with a black, rapidly progressing, symptomatology with a different course
(so-called pneumonic plague, bubonic plague), serodiagnosis supported by
clinical symptomatology permits reliable differentiation of the two types
of infection.
Sequence CWU
1
241306PRTYersinia 1Met Thr Ile Asn Ile Lys Thr Asp Ser Pro Ile Ile Thr Thr
Gly Ser1 5 10 15Gln Ile
Asp Ala Ile Thr Thr Glu Thr Val Gly Gln Ser Gly Glu Val 20
25 30Lys Lys Thr Glu Asp Thr Arg His Glu
Ala Gln Ala Ile Lys Ser Ser 35 40
45Glu Ala Ser Leu Ser Arg Ser Gln Val Pro Glu Leu Ile Lys Pro Ser 50
55 60Gln Gly Ile Asn Val Ala Leu Leu Ser
Lys Ser Gln Gly Asp Leu Asn65 70 75
80Gly Thr Leu Ser Ile Leu Leu Leu Leu Leu Glu Leu Ala Arg
Lys Ala 85 90 95Arg Glu
Met Gly Leu Gln Gln Arg Asp Ile Glu Asn Lys Ala Ala Ile 100
105 110Thr Ala Gln Lys Glu Gln Val Ala Glu
Met Val Ser Gly Ala Lys Leu 115 120
125Met Ile Ala Met Ala Val Val Ser Gly Ile Met Ala Ala Thr Ser Thr
130 135 140Val Ala Ser Ala Phe Ser Ile
Ala Lys Glu Val Lys Ile Val Lys Gln145 150
155 160Glu Gln Ile Leu Asn Ser Asn Ile Ala Gly Arg Asp
Gln Leu Ile Asp 165 170
175Thr Lys Leu Gln Gln Met Ser Asn Thr Ser Asp Lys Ala Val Ser Arg
180 185 190Glu Asp Ile Gly Arg Ile
Trp Lys Pro Glu Gln Val Ala Asp Gln Asn 195 200
205Lys Leu Ala Leu Leu Asp Lys Glu Phe Arg Met Thr Asp Ser
Lys Ala 210 215 220Asn Ala Phe Asn Ala
Ala Thr Gln Pro Leu Gly Gln Met Ala Asn Ser225 230
235 240Ala Ile Gln Val His Arg Gly Tyr Ser Gln
Ala Glu Val Lys Glu Lys 245 250
255Glu Val Asn Ala Ser Ile Ala Ala Asn Glu Lys Gln Lys Ala Glu Glu
260 265 270Ala Met Asn Tyr Asn
Asp Asn Phe Met Lys Asp Val Leu Arg Leu Ile 275
280 285Glu Gln Tyr Val Ser Ser His Thr His Ala Met Lys
Ala Ala Phe Gly 290 295 300Val
Val3052468PRTYersinia 2Met Asn Leu Ser Leu Ser Asp Leu His Arg Gln Val
Ser Arg Leu Val1 5 10
15Gln Gln Glu Ser Gly Asp Cys Thr Gly Lys Leu Arg Gly Asn Val Ala
20 25 30Ala Asn Lys Glu Thr Thr Phe
Gln Gly Leu Thr Ile Ala Ser Gly Ala 35 40
45Arg Glu Ser Glu Lys Val Phe Ala Gln Thr Val Leu Ser His Val
Ala 50 55 60Asn Ile Val Leu Thr Gln
Glu Asp Thr Ala Lys Leu Leu Gln Ser Thr65 70
75 80Val Lys His Asn Leu Asn Asn Tyr Glu Leu Arg
Ser Val Gly Asn Gly 85 90
95Asn Ser Val Leu Val Ser Leu Arg Ser Asp Gln Met Thr Leu Gln Asp
100 105 110Ala Lys Val Leu Leu Glu
Ala Ala Leu Arg Gln Glu Ser Gly Ala Arg 115 120
125Gly His Val Ser Ser His Ser His Ser Val Leu His Ala Pro
Gly Thr 130 135 140Pro Val Arg Glu Gly
Leu Arg Ser His Leu Asp Pro Arg Thr Pro Pro145 150
155 160Leu Pro Pro Arg Glu Arg Pro His Thr Ser
Gly His His Gly Ala Gly 165 170
175Glu Ala Arg Ala Thr Ala Pro Ser Thr Val Ser Pro Tyr Gly Pro Glu
180 185 190Ala Arg Ala Glu Leu
Ser Ser Arg Leu Thr Thr Leu Arg Asn Thr Leu 195
200 205Ala Pro Ala Thr Asn Asp Pro Arg Tyr Leu Gln Ala
Cys Gly Gly Glu 210 215 220Lys Leu Asn
Arg Phe Arg Asp Ile Gln Cys Cys Arg Gln Thr Ala Val225
230 235 240Arg Ala Asp Leu Asn Ala Asn
Tyr Ile Gln Val Gly Asn Thr Arg Thr 245
250 255Ile Ala Cys Gln Tyr Pro Leu Gln Ser Gln Leu Glu
Ser His Phe Arg 260 265 270Met
Leu Ala Glu Asn Arg Thr Pro Val Leu Ala Val Leu Ala Ser Ser 275
280 285Ser Glu Ile Ala Asn Gln Arg Phe Gly
Met Pro Asp Tyr Phe Arg Gln 290 295
300Ser Gly Thr Tyr Gly Ser Ile Thr Val Glu Ser Lys Met Thr Gln Gln305
310 315 320Val Gly Leu Gly
Asp Gly Ile Met Ala Asp Met Tyr Thr Leu Thr Ile 325
330 335Arg Glu Ala Gly Gln Lys Thr Ile Ser Val
Pro Val Val His Val Gly 340 345
350Asn Trp Pro Asp Gln Thr Ala Val Ser Ser Glu Val Thr Lys Ala Leu
355 360 365Ala Ser Leu Val Asp Gln Thr
Ala Glu Thr Lys Arg Asn Met Tyr Glu 370 375
380Ser Lys Gly Ser Ser Ala Val Ala Asp Asp Ser Lys Leu Arg Pro
Val385 390 395 400Ile His
Cys Arg Ala Gly Val Gly Arg Thr Ala Gln Leu Ile Gly Ala
405 410 415Met Cys Met Asn Asp Ser Arg
Asn Ser Gln Leu Ser Val Glu Asp Met 420 425
430Val Ser Gln Met Arg Val Gln Arg Asn Gly Ile Met Val Gln
Lys Asp 435 440 445Glu Gln Leu Asp
Val Leu Ile Lys Leu Ala Glu Gly Gln Gly Arg Pro 450
455 460Leu Leu Asn Ser4653293PRTYersinia 3Met Thr Thr Leu
His Asn Ile Ser Tyr Gly Asn Thr Thr Leu Arg Asn1 5
10 15Glu His Pro Glu Thr Ala Ser Ser Gln Ile
Val Asn Gln Thr Leu Gly 20 25
30Gln Phe Arg Gly Glu Ser Val Gln Ile Val Ser Gly Thr Leu Gln Ser
35 40 45Ile Ala Asp Met Ala Glu Glu Val
Thr Phe Val Phe Ser Glu Arg Lys 50 55
60Glu Leu Ser Leu Asp Lys Arg Lys Leu Ser Asp Ser Gln Ala Arg Val65
70 75 80Ser Asp Val Glu Glu
Gln Val Asn Gln Tyr Leu Ser Lys Val Pro Glu 85
90 95Leu Glu Gln Lys Gln Asn Val Ser Glu Leu Leu
Ser Leu Leu Ser Asn 100 105
110Ser Pro Asn Ile Ser Leu Ser Gln Leu Lys Ala Tyr Leu Glu Gly Lys
115 120 125Ser Glu Glu Pro Ser Glu Gln
Phe Lys Met Leu Cys Gly Leu Arg Asp 130 135
140Ala Leu Lys Gly Arg Pro Glu Leu Ala His Leu Ser His Leu Val
Glu145 150 155 160Gln Ala
Leu Val Ser Met Ala Glu Glu Gln Gly Glu Ala Ile Val Leu
165 170 175Gly Ala Arg Ile Thr Pro Glu
Ala Tyr Arg Glu Ser Gln Ser Ser Val 180 185
190Asn Pro Leu Gln Pro Leu Arg Asp Thr Tyr Arg Asp Ala Val
Met Gly 195 200 205Tyr Gln Gly Ile
Tyr Ala Ile Trp Ser Asp Leu Gln Lys Arg Phe Pro 210
215 220Asn Gly Asp Ile Asp Ser Val Ile Leu Phe Leu Gln
Lys Ala Leu Ser225 230 235
240Ala Asp Leu Gln Ser Gln Gln Ser Gly Ser Gly Arg Glu Lys Leu Gly
245 250 255Ile Val Ile Ser Asp
Leu Gln Lys Leu Lys Glu Phe Gly Ser Val Ser 260
265 270Asp Gln Val Lys Gly Phe Trp Gln Phe Phe Ser Glu
Gly Lys Thr Asn 275 280 285Gly Val
Arg Pro Phe 2904220PRTYersinia 4Met Pro Lys Ile Ser Ser Phe Ile Ser
Thr Ser Leu Pro Leu Pro Thr1 5 10
15Ser Val Ser Gly Ser Ser Ser Val Gly Glu Met Ser Gly Arg Ser
Val 20 25 30Ser Gln Gln Lys
Ser Glu Gln Tyr Ala Asn Asn Leu Ala Gly Arg Thr 35
40 45Glu Ser Pro Gln Gly Ser Ser Leu Ala Ser Arg Ile
Thr Glu Lys Leu 50 55 60Ser Ser Met
Ala Arg Ser Ala Ile Glu Phe Ile Lys Arg Met Phe Ser65 70
75 80Glu Gly Ser His Lys Pro Val Val
Thr Pro Ala Pro Thr Pro Ala Gln 85 90
95Met Pro Ser Pro Thr Ser Phe Ser Asp Ser Ile Lys Gln Leu
Ala Ala 100 105 110Glu Thr Leu
Pro Lys Tyr Ile Gln Gln Leu Ser Ser Leu Asp Ala Glu 115
120 125Thr Leu Gln Lys Asn His Asp Gln Phe Ala Thr
Gly Ser Gly Pro Leu 130 135 140Arg Gly
Ser Ile Thr Gln Cys Gln Gly Leu Met Gln Phe Cys Gly Gly145
150 155 160Glu Leu Gln Ala Glu Ala Ser
Ala Ile Leu Asn Thr Pro Val Cys Gly 165
170 175Ile Pro Phe Ser Gln Trp Gly Thr Ile Gly Gly Ala
Ala Ser Ala Tyr 180 185 190Val
Ala Ser Gly Val Asp Leu Thr Gln Ala Ala Asn Glu Leu Lys Gly 195
200 205Leu Ala Gln Gln Met His Gln Leu Leu
Ser Leu Met 210 215 2205505PRTYersinia
5Met Phe Ile Asn Pro Arg Asn Val Ser Asn Thr Phe Leu Gln Glu Pro1
5 10 15Leu Arg His Ser Ser Asp
Leu Thr Glu Ile Pro Val Glu Ala Glu Asn 20 25
30Val Lys Ser Lys Thr Glu Tyr Tyr Asn Ala Trp Ser Glu
Trp Glu Arg 35 40 45Asn Ala Pro
Pro Gly Asn Gly Glu Gln Arg Glu Met Ala Val Ser Arg 50
55 60Leu Arg Asp Cys Leu Asp Arg Gln Ala His Glu Leu
Glu Leu Asn Asn65 70 75
80Leu Gly Leu Ser Ser Leu Pro Glu Leu Pro Pro His Leu Glu Arg Leu
85 90 95Val Ala Ser Cys Asn Ser
Leu Thr Glu Leu Pro Glu Leu Pro Gln Ser 100
105 110Leu Lys Ser Leu Glu Val Tyr Glu Asn Asn Leu Lys
Ala Leu Pro Asp 115 120 125Leu Pro
Pro Leu Leu Val Asp Leu Arg Val Phe Asn Asn Gln Leu Glu 130
135 140Glu Leu Pro Glu Leu Gln Asn Leu Pro Phe Leu
Thr Glu Ile Tyr Ala145 150 155
160Asn Asn Asn Ser Leu Lys Thr Leu Pro Asp Leu Pro Pro Ser Leu Val
165 170 175Asp Leu Asn Val
Arg Glu Asn Tyr Leu Thr Ala Leu Pro Glu Leu Pro 180
185 190Gln Ser Leu Ile Phe Leu Asp Ile Ser Asp Asn
Ile Leu Ser Gly Leu 195 200 205Ser
Glu Leu Pro Pro Asn Leu Ser Cys Leu Asp Ala Ser Arg Asn Gly 210
215 220Ile Arg Ser Leu Cys Asp Leu Pro Pro Ser
Leu Val Tyr Leu Asp Val225 230 235
240Arg Asp Asn Gln Leu Ile Glu Leu Pro Ala Leu Pro Ser Gly Leu
Glu 245 250 255Arg Leu Ile
Ala Ser Phe Asn His Leu Ala Glu Leu Pro Glu Leu Pro 260
265 270Pro Asn Leu Tyr Tyr Leu Asp Ala Ser Arg
Asn Glu Ile Ser Ser Leu 275 280
285Cys Asp Leu Pro Pro Ser Leu Val Asp Leu Asn Val Arg Lys Asn Gln 290
295 300Leu Ile Glu Leu Pro Ala Leu Pro
Pro Asp Leu Glu Arg Leu Ile Ala305 310
315 320Ser Phe Asn His Leu Ala Glu Leu Pro Glu Leu Pro
Pro Asn Leu Ser 325 330
335Tyr Leu Asp Ala Ser Arg Asn Glu Ile Ser Ser Leu Cys Asp Leu Pro
340 345 350Pro Ser Leu Val Asp Leu
Asn Val Arg Lys Asn Gln Leu Ile Glu Leu 355 360
365Pro Ala Leu Pro Pro Asp Leu Glu Arg Leu Ile Ala Ser Phe
Asn His 370 375 380Leu Ala Glu Leu Pro
Glu Leu Pro Pro Asn Leu Ser Tyr Leu Asp Ala385 390
395 400Ser Arg Asn Glu Ile Ser Ser Leu Cys Asp
Leu Pro Pro Ser Leu Val 405 410
415Glu Leu Asp Val Arg Asp Asn Gln Leu Ile Glu Leu Pro Ala Leu Pro
420 425 430Pro His Leu Glu Arg
Leu Ile Ala Ser Leu Asn His Leu Ala Glu Val 435
440 445Pro Glu Leu Pro Gln Asn Leu Lys Gln Leu His Val
Glu His Asn Ala 450 455 460Leu Arg Glu
Phe Pro Asp Ile Pro Glu Ser Val Glu Asp Leu Arg Met465
470 475 480Asp Ser Glu Arg Val Ile Asp
Pro Tyr Glu Phe Ala His Glu Thr Ile 485
490 495Asp Lys Leu Glu Asp Asp Val Phe Glu 500
5056333PRTYersinia 6Met Ile Arg Ala Tyr Glu Gln Asn Pro
Gln His Phe Ile Glu Asp Leu1 5 10
15Glu Lys Val Arg Val Glu Gln Leu Thr Gly His Gly Ser Ser Val
Leu 20 25 30Glu Glu Leu Val
Gln Leu Val Lys Asp Lys Lys Ile Asp Ile Ser Ile 35
40 45Lys Tyr Asp Pro Lys Lys Asp Ser Glu Val Phe Ala
Glu Arg Val Ile 50 55 60Thr Asp Asp
Ile Glu Leu Leu Lys Lys Ile Leu Ala Tyr Phe Leu Pro65 70
75 80Glu Asp Ala Ile Leu Lys Gly Gly
His Tyr Asp Asn Gln Leu Gln Asn 85 90
95Gly Ile Lys Arg Val Lys Glu Phe Leu Glu Ser Ser Pro Asn
Thr Gln 100 105 110Trp Glu Leu
Arg Ala Phe Met Ala Val Met His Phe Ser Leu Thr Ala 115
120 125Asp Arg Ile Asp Asp Asp Ile Leu Lys Val Ile
Val Asp Ser Met Asn 130 135 140His His
Gly Asp Ala Arg Ser Lys Leu Arg Glu Glu Leu Ala Glu Leu145
150 155 160Thr Ala Glu Leu Lys Ile Tyr
Ser Val Ile Gln Ala Glu Ile Asn Lys 165
170 175His Leu Ser Ser Ser Gly Thr Ile Asn Ile His Glu
Lys Ser Ile Asn 180 185 190Leu
Met Asp Lys Asn Leu Tyr Gly Tyr Thr Asp Glu Glu Ile Phe Lys 195
200 205Ala Ser Ala Glu Tyr Lys Ile Leu Lys
Lys Met Pro Gln Thr Thr Ile 210 215
220Lys Asp Asp Glu Leu His Glu Val Gly Val Ile Ala Gly Ala Glu Lys225
230 235 240Gln Ile Val Ser
Ile Lys Asn Phe Leu Glu Ser Glu Asn Lys Arg Thr 245
250 255Gly Ala Leu Gly Asn Leu Lys Asp Ser Tyr
Ser Tyr Asn Lys Asp Asn 260 265
270Asn Glu Leu Ser His Phe Ala Thr Ala Cys Ser Asp Lys Ser Arg Pro
275 280 285Leu Asn Asp Leu Val Ser Gln
Lys Thr Thr Gln Leu Ser Asp Ile Thr 290 295
300Ser Arg Phe Asn Ser Ala Ile Glu Ala Leu Asn Arg Phe Ile Gln
Lys305 310 315 320Tyr Asp
Ser Val Met Gln Arg Leu Leu Asp Asp Thr Arg 325
3307131PRTYersinia 7Met Glu Pro Thr Val Ile Asn Ser Lys Asp Ile Ser
Ala Thr Lys Thr1 5 10
15Val Lys Glu Gly Gly Ser Phe Ser Val Glu Phe Lys Ala Thr Glu Asn
20 25 30Glu Ile Val Ser Gly Lys Leu
Asp Ala Asp Thr Pro Ala Phe His Leu 35 40
45Val Met Ser Asp Ser Gly Glu His Lys Gly Trp Asn Val Arg Pro
Thr 50 55 60Gly Ala Ser Glu Gly Gly
Gln Met Val Ser Ala Asp Gly Thr Arg Val65 70
75 80Asp Leu His Thr Asn Glu Leu Ser Trp Asp Asn
Asp His Trp Trp Ile 85 90
95Asp Asp Gly Ser Glu Arg Val Glu Ala Thr Phe Phe Leu Ala Ala Gly
100 105 110Asp Glu Val Lys Ala Gly
Glu Tyr Gln Phe Thr Gly Arg Val Glu Glu 115 120
125Tyr Val Glu 1308133PRTYersinia 8Met Ser Thr Val Ile
Asn Ser Lys Asp Val Ser Gly Glu Val Thr Val1 5
10 15Lys Gln Gly Asn Thr Phe His Val Asp Phe Ala
Pro Asn Thr Gly Glu 20 25
30Ile Phe Ala Gly Lys Gln Pro Gly Asp Val Thr Met Phe Thr Leu Thr
35 40 45Met Gly Asp Thr Ala Pro His Gly
Gly Trp Arg Leu Ile Pro Thr Gly 50 55
60Asp Ser Lys Gly Gly Tyr Met Ile Ser Ala Asp Gly Asp Tyr Val Gly65
70 75 80Leu Tyr Ser Tyr Met
Met Ser Trp Val Gly Ile Asp Asn Asn Trp Tyr 85
90 95Ile Asn Asp Asp Ser Pro Lys Asp Ile Lys Asp
His Leu Tyr Val Lys 100 105
110Ala Gly Thr Val Leu Lys Pro Thr Thr Tyr Lys Phe Thr Gly Arg Val
115 120 125Glu Glu Tyr Val Phe
1309396DNAYersinia 9atggaaccga ctgttattaa tagtaaagac atctctgcaa
caaaaactgt taaagaggga 60ggttcgttct cagttgaatt caaggccact gaaaacgaga
ttgtgtcagg caaattggat 120gcagatacac ctgccttcca tctggtaatg tcggactcag
gggaacataa aggttggaat 180gttcggccta ccggtgcatc tgagggagga cagatggttt
ctgcagatgg taccagagtt 240gacttacata caaatgagct atcgtgggat aacgaccact
ggtggataga tgacggttct 300gagcgtgtgg aagcgacttt ctttcttgct gctggcgacg
aggttaaagc aggtgaatat 360cagttcactg ggcgtgttga ggaatatgtc gagtaa
39610402DNAYersinia 10atgtctactg tcattaactc
caaggatgtt tctggtgagg tgactgtcaa gcagggaaac 60acattccacg tcgattttgc
gcctaacaca ggagagattt ttgcgggtaa acagccgggt 120gatgtcacta tgtttacgct
aactatgggt gatactgcac cacacggtgg ttggcgtttg 180attccaacag gggactcaaa
aggtggatat atgatcagcg ccgatggtga ctatgttggt 240ttatacagtt atatgatgtc
atgggtaggt atagataata actggtatat aaatgatgac 300tctcctaaag atataaaaga
tcatctgtac gttaaggcag ggactgtcct taaaccaacg 360acttataaat tcacggggcg
tgttgaagag tatgtatttt aa 40211159PRTYersinia 11Met
Asn Met Lys Lys Phe Val Lys Lys Pro Leu Ala Ile Ala Val Leu1
5 10 15Met Leu Ala Ser Gly Gly Met
Val Asn Met Val His Ala Glu Pro Thr 20 25
30Val Ile Asn Ser Lys Asp Ile Ser Ala Thr Lys Thr Val Lys
Glu Gly 35 40 45Gly Ser Phe Ser
Val Glu Phe Lys Ala Thr Glu Asn Glu Ile Val Ser 50 55
60Gly Lys Leu Asp Ala Asp Thr Pro Ala Phe His Leu Val
Met Ser Asp65 70 75
80Ser Gly Glu His Lys Gly Trp Asn Val Arg Pro Thr Gly Ala Ser Glu
85 90 95Gly Gly Gln Met Val Ser
Ala Asp Gly Thr Arg Val Asp Leu His Thr 100
105 110Asn Glu Leu Ser Trp Asp Asn Asp His Trp Trp Ile
Asp Asp Gly Ser 115 120 125Glu Arg
Val Glu Ala Thr Phe Phe Leu Ala Ala Gly Asp Glu Val Lys 130
135 140Ala Gly Glu Tyr Gln Phe Thr Gly Arg Val Glu
Glu Tyr Val Glu145 150
15512158PRTYersinia 12Met Lys Met Lys Cys Phe Ala Lys Asn Ala Leu Ala Val
Thr Thr Leu1 5 10 15Met
Ile Ala Ala Cys Gly Met Ala Asn Ala Ser Thr Val Ile Asn Ser 20
25 30Lys Asp Val Ser Gly Glu Val Thr
Val Lys Gln Gly Asn Thr Phe His 35 40
45Val Asp Phe Ala Pro Asn Thr Gly Glu Ile Phe Ala Gly Lys Gln Pro
50 55 60Gly Asp Val Thr Met Phe Thr Leu
Thr Met Gly Asp Thr Ala Pro His65 70 75
80Gly Gly Trp Arg Leu Ile Pro Thr Gly Asp Ser Lys Gly
Gly Tyr Met 85 90 95Ile
Ser Ala Asp Gly Asp Tyr Val Gly Leu Tyr Ser Tyr Met Met Ser
100 105 110Trp Val Gly Ile Asp Asn Asn
Trp Tyr Ile Asn Asp Asp Ser Pro Lys 115 120
125Asp Ile Lys Asp His Leu Tyr Val Lys Ala Gly Thr Val Leu Lys
Pro 130 135 140Thr Thr Tyr Lys Phe Thr
Gly Arg Val Glu Glu Tyr Val Phe145 150
1551330DNAArtificial Sequenceprimer 13gtaattccat atgaatatga aaaaatttgt
301427DNAArtificial Sequenceprimer
14gtaatcccat atggcaacaa aaactgt
271524DNAArtificial Sequenceprimer 15ttactcgagt tcacctgctt taac
241628DNAArtificial Sequenceprimer
16atctactcga gctcgacata ttcctcaa
281738PRTArtificial Sequenceprimer 17Cys Ala Cys Ala Thr Ala Thr Gly Gly
Ala Ala Cys Cys Gly Ala Cys1 5 10
15Thr Gly Thr Thr Ala Thr Thr Ala Ala Thr Ala Gly Thr Ala Ala
Ala 20 25 30Gly Ala Cys Ala
Thr Cys 351832DNAArtificial Sequenceprimer 18atggatcctt actcgacata
ttcctcaaca cg 321933DNAArtificial
Sequenceprimer 19gccatatgtc tactgtcatt aactccaagg atg
332034DNAArtificial Sequenceprimer 20caggatcctt aaaatacata
ctcttcaaca cgcc 3421396DNAYersinia
21atggaaccga ctgttattaa tagtaaagac atctctgcaa caaaaactgt taaagaggga
60ggttcgttct cagttgaatt caaggccact gaaaacgaga ttgtgtcagg caaattggat
120gcagatacac ctgccttcca tctggtaatg tcggactcag gggaacataa aggttggaat
180gttcggccta ccggtgcatc tgagggagga cagatggttt ctgcagatgg taccagagtt
240gacttacata caaatgagct atcgtgggat aacgaccact ggtggataga tgacggttct
300gagcgtgtgg aagcgacttt ctttcttgct gctggcgacg aggttaaagc aggtgaatat
360cagttcactg ggcgtgttga ggaatatgtc gagtaa
39622402DNAYersinia 22atgtctactg tcattaactc caaggatgtt tctggtgagg
tgactgtcaa gcagggaaac 60acattccacg tcgattttgc gcctaacaca ggagagattt
ttgcgggtaa acagccgggt 120gatgtcacta tgtttacgct aactatgggt gatactgcac
cacacggtgg ttggcgtttg 180attccaacag gggactcaaa aggtggatat atgatcagcg
ccgatggtga ctatgttggt 240ttatacagtt atatgatgtc atgggtaggt atagataata
actggtatat aaatgatgac 300tctcctaaag atataaaaga tcatctgtac gttaaggcag
ggactgtcct taaaccaacg 360acttataaat tcacggggcg tgttgaagag tatgtatttt
aa 40223131PRTYersinia 23Met Glu Pro Thr Val Ile
Asn Ser Lys Asp Ile Ser Ala Thr Lys Thr1 5
10 15Val Lys Glu Gly Gly Ser Phe Ser Val Glu Phe Lys
Ala Thr Glu Asn 20 25 30Glu
Ile Val Ser Gly Lys Leu Asp Ala Asp Thr Pro Ala Phe His Leu 35
40 45Val Met Ser Asp Ser Gly Glu His Lys
Gly Trp Asn Val Arg Pro Thr 50 55
60Gly Ala Ser Glu Gly Gly Gln Met Val Ser Ala Asp Gly Thr Arg Val65
70 75 80Asp Leu His Thr Asn
Glu Leu Ser Trp Asp Asn Asp His Trp Trp Ile 85
90 95Asp Asp Gly Ser Glu Arg Val Glu Ala Thr Phe
Phe Leu Ala Ala Gly 100 105
110Asp Glu Val Lys Ala Gly Glu Tyr Gln Phe Thr Gly Arg Val Glu Glu
115 120 125Tyr Val Glu
13024133PRTYersinia 24Met Ser Thr Val Ile Asn Ser Lys Asp Val Ser Gly Glu
Val Thr Val1 5 10 15Lys
Gln Gly Asn Thr Phe His Val Asp Phe Ala Pro Asn Thr Gly Glu 20
25 30Ile Phe Ala Gly Lys Gln Pro Gly
Asp Val Thr Met Phe Thr Leu Thr 35 40
45Met Gly Asp Thr Ala Pro His Gly Gly Trp Arg Leu Ile Pro Thr Gly
50 55 60Asp Ser Lys Gly Gly Tyr Met Ile
Ser Ala Asp Gly Asp Tyr Val Gly65 70 75
80Leu Tyr Ser Tyr Met Met Ser Trp Val Gly Ile Asp Asn
Asn Trp Tyr 85 90 95Ile
Asn Asp Asp Ser Pro Lys Asp Ile Lys Asp His Leu Tyr Val Lys
100 105 110Ala Gly Thr Val Leu Lys Pro
Thr Thr Tyr Lys Phe Thr Gly Arg Val 115 120
125Glu Glu Tyr Val Phe 130
* * * * *